View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19517_high_17 (Length: 306)
Name: NF19517_high_17
Description: NF19517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19517_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 12951054 - 12951329
Alignment:
| Q |
7 |
agcaccacagaaaagattgaagaatgaacgcattcttcttagttatacccggactccttcattcttcttagttaatttgtcatcttgcaggctctgggac |
106 |
Q |
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| T |
12951054 |
agcaccaaagaaaagattgaagcatgaacgcattcttcttagttatacccggactccttcattcttcttagttaatttgtcatcttgcaggctctgggac |
12951153 |
T |
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| Q |
107 |
cctacttcagtaagcttcatgaaaaatgttttaaatggagatcaaagttttctgttggctattactgaaggaagccgggtaattttttagatttatagtg |
206 |
Q |
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| T |
12951154 |
cctacttcagtaagcttcatgcaaaatgttttaaatggagatcaaagttctctgttagctattactgaaggaagccgggtaattttttagatttatagtg |
12951253 |
T |
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| Q |
207 |
ataaattataaaagcatagagacgccatttggtatcgtgtctgcctgttagaaatcttgtttgacacaacatgtgt |
282 |
Q |
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| T |
12951254 |
ataaattataaaagcatagagacgccatttggtattgtgtctgcttgttagaaatcttgtttgacacaacatgtgt |
12951329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 62 - 306
Target Start/End: Original strand, 12889558 - 12889806
Alignment:
| Q |
62 |
ccttcattcttcttagttaatttgtcatcttgcaggctctgggaccctacttcagtaagcttcatgaaaaatgttttaaatggagatcaaagttttctgt |
161 |
Q |
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| T |
12889558 |
cctttattcttcttagttaatttgtcatcttgcaggctctgggaccctacttcagtaagctttgtgcaaaatgttgtaaatggagatcgaagttctctgt |
12889657 |
T |
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| Q |
162 |
tggctattactgaaggaagccgggtaattttttagatttatagtgataaattataaaagcatagagacgccatttggtatcgtgtctgcctgttagaaat |
261 |
Q |
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| T |
12889658 |
tagctattactgaaggaagccaggtaattttttagatttatagtgataaattataaaagcatagagacaccatttggtattgtgtctactttttagaaat |
12889757 |
T |
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| Q |
262 |
cttgtttgacacaaca----tgtgtccaacatgtgtgccgtgtcacata |
306 |
Q |
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| T |
12889758 |
cttgttcgacacaacatatgtctgtcctacatgtgtgccgtgtcacata |
12889806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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