View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19517_high_18 (Length: 301)
Name: NF19517_high_18
Description: NF19517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19517_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 40411809 - 40411513
Alignment:
| Q |
1 |
caagatttttattcttagttatagatggcgcagagactctaaattcctcagcagatattcgatgtgcttcaaacacttcagcagcagcgataaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40411809 |
caagatttttattcttagttatagatggcgcagagactctaaattcctcagcagatattcgatgtgcttcaaacacttcagcagcagcgataaaacccat |
40411710 |
T |
|
| Q |
101 |
acccgccttaagttcgtgaccacaaagtgagatatcaaattctgcaaaatttaataagaaaatcaaataaacaattggcttaatcaaataattgttgtag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40411709 |
acccgccttaagttcgtgaccacaaagtgagatatcaaattctgcaaaatttaataagaaaatcaaataaacaattggcttaatcaaacaattgttgtag |
40411610 |
T |
|
| Q |
201 |
aataaaagataaaataatttgaagcacaattcttagtccttactcaaaccaaaatgactttgatccccctcattggaagttgctgtctgtggtgctg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40411609 |
aataaaagataaaataatttgaagcacaattcttagtccttactcaaaccaaaatgactttgatccccctcattggaagttgctgtctgaggtgctg |
40411513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 29036668 - 29036580
Alignment:
| Q |
45 |
tcctcagcagatattcgatgtgcttcaaacacttcagcagcagcgataaaacccatacccgccttaagttcgtgaccacaaagtgagat |
133 |
Q |
| |
|
||||| || ||||||||||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| |||||||| || ||||| |
|
|
| T |
29036668 |
tcctctgccgatattcgatgggcttcaaacactccagcagcagctaccaaacccatacctgccttaagttcatgaccacagagggagat |
29036580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University