View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19517_high_5 (Length: 336)
Name: NF19517_high_5
Description: NF19517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19517_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 33828285 - 33827955
Alignment:
| Q |
1 |
tttttcattaagatatacataagtttttaatttctttttaaccataaacctgtttaagttatatcaccaacttaatcaaataattcctctcatattaact |
100 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828285 |
tttttcgttaagacatacataagtttttaatttctttttaaccataaacctgtttaagttatatcaccaacttaatcaaataattcctctcatattaact |
33828186 |
T |
|
| Q |
101 |
ataattgttttaataacttttcagccattaccggatgatttcaaaactacatcattactgacttcttgcaccgtgtaaaatttatcattgcagcattaaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828185 |
ataattgttttaataatttttcagccattaccggatgatttcaaaactacatcattactgacttcttgcaccgtgtaaaatttatcattgcagcattaaa |
33828086 |
T |
|
| Q |
201 |
atctcacttccaattccaaaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828085 |
atctcacttccaattccaaaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttc |
33827986 |
T |
|
| Q |
301 |
ttactgtattgattgtatggcctatgatact |
331 |
Q |
| |
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||||||||||||||||||||||||| ||||| |
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| T |
33827985 |
ttactgtattgattgtatggcctataatact |
33827955 |
T |
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