View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19517_high_6 (Length: 336)
Name: NF19517_high_6
Description: NF19517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19517_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 328
Target Start/End: Original strand, 179877 - 180201
Alignment:
| Q |
5 |
caccatacgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaa |
104 |
Q |
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| T |
179877 |
caccataagatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcacgttcaaattgtctagcaa |
179976 |
T |
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| Q |
105 |
aaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactatt |
203 |
Q |
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| T |
179977 |
aaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactatt |
180076 |
T |
|
| Q |
204 |
atcaacaatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctg |
303 |
Q |
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| T |
180077 |
atcaacaacggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaaaggctg |
180176 |
T |
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| Q |
304 |
acatcatctcctttgcttcctatga |
328 |
Q |
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| T |
180177 |
acatcatctcctttgcttcctatga |
180201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 1700270 - 1700585
Alignment:
| Q |
11 |
acgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattt |
110 |
Q |
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| T |
1700270 |
acgatcctattttcaaca---tggccaccaacccttccaacaccaaatcatctcttattctaaatgcctcaatcacgttcaaactgtctcgcaaaaattt |
1700366 |
T |
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| Q |
111 |
tcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactattatcaac |
209 |
Q |
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| T |
1700367 |
ccgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactattatcaac |
1700466 |
T |
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| Q |
210 |
aatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatca |
309 |
Q |
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|| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1700467 |
aacggtgtctctgctcccaatcctgattacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacagca |
1700566 |
T |
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| Q |
310 |
tctcctttgcttcctatga |
328 |
Q |
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| T |
1700567 |
tctcctttgcttcctatga |
1700585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 5399261 - 5399354
Alignment:
| Q |
235 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatga |
328 |
Q |
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|||||||||| ||||||||| ||||||| || ||||||||||||||| ||||||| |||||||| || |||| || || ||||| |||||||| |
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| T |
5399261 |
aatacacaaattggttcactattgatcaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatga |
5399354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 3540258 - 3540351
Alignment:
| Q |
235 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatga |
328 |
Q |
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|||||||||| ||||||||| |||| || || ||||||||||||||| |||||| |||||||| || |||| || || ||||| |||||||| |
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| T |
3540258 |
aatacacaaattggttcactattgaccaactcatcatcaatcttcttatctcctttatgacagaagcagacagtatatcatttgcctcctatga |
3540351 |
T |
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