View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19518_low_2 (Length: 396)

Name: NF19518_low_2
Description: NF19518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19518_low_2
NF19518_low_2
[»] chr7 (15 HSPs)
chr7 (1-384)||(20455904-20456287)
chr7 (5-334)||(20414279-20414620)
chr7 (136-327)||(7327712-7327903)
chr7 (195-250)||(22525575-22525630)
chr7 (199-250)||(22534240-22534291)
chr7 (103-155)||(16846945-16846997)
chr7 (284-332)||(21210751-21210799)
chr7 (201-241)||(24391010-24391050)
chr7 (118-169)||(21210915-21210966)
chr7 (290-332)||(24391081-24391123)
chr7 (41-82)||(13888635-13888676)
chr7 (110-155)||(20338462-20338507)
chr7 (103-155)||(13888574-13888626)
chr7 (13-81)||(21219285-21219353)
chr7 (289-325)||(24383802-24383838)
[»] chr4 (2 HSPs)
chr4 (49-254)||(2910474-2910682)
chr4 (195-240)||(11982094-11982139)
[»] scaffold0128 (2 HSPs)
scaffold0128 (194-245)||(8197-8248)
scaffold0128 (106-155)||(3656-3705)


Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 20455904 - 20456287
Alignment:
Q  1 ccttactatgagttgaatgataagaattgtcgtaaatttattggtccctgcaatggattggtttgcttgcttggttattctcttgccgatcataatgcag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  20455904 ccttactatgagttgaatgataaggattgtcgtaaatttattggttcctgcaatggattggtttgcttgcttggttattctctcgccgatcatagtgcag 20456003  T
Q  101 ttatgtggtttcgtttttggaaccctgccaccaggaaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgtttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20456004 ttatgtggtttcgtttttggaaccctgccaccaggaaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgtttgt 20456103  T
Q  201 gtttggttttgataattcaaccgacacatataaggttgtggccttgaattgtgaagatgttttcaaaaaacctgaggttaaaatgagcatttttagtttg 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20456104 gttttgttttgataattcaaccgacacatataaggttgtggccttgaattgtgaagatgttttcaaaaaacctgaggttaaaatgagcatttttagtttg 20456203  T
Q  301 ggtgataatgtttggagaagtattcaatgtttaactaattgtgttggcgccctctctttatctccttattcaagtgtctgtggt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20456204 ggtgataatgtttggagaagtattcaatgtttaactaattgtgttggcgccctctctttatctccttattcaagtgtctatggt 20456287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 20414279 - 20414620
Alignment:
Q  5 actatgagttgaatgataagaattgtcgtaaatttattggtccctgcaatggattggtttgcttgcttggttattctcttgccgatcataatgcagttat 104  Q
    ||||| ||||||||||||||   |||||| || || ||||| |||||||||||||||| |||||||| ||||||||||| ||| || ||||||||||| |    
T  20414279 actatcagttgaatgataagggctgtcgtgaagttgttggttcctgcaatggattggtctgcttgctcggttattctctcgccaatgataatgcagttgt 20414378  T
Q  105 gtggtttcgtttttggaaccctgccaccaggaaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgtttgtgttt 204  Q
    |||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20414379 gtggctccgtttttggaacccggccaccagaaaaatttctgataaattaggatatttgcatgctgacaattatagacggaactcttggatgtttgtgttt 20414478  T
Q  205 ggttttgataattcaaccgacacatataaggttgtggccttgaattgtgaag------------atgttttcaaaaaacctgaggttaaaatgagcattt 292  Q
    |||| |||| |||||||| |||| |||||| | || ||||| ||||||||||            ||||| ||| |||||| ||||| || ||||||||||    
T  20414479 ggttatgatgattcaaccaacacttataagatcgttgccttaaattgtgaagacgttctcagaaatgttctcagaaaacccgaggtgaacatgagcattt 20414578  T
Q  293 ttagtttgggtgataatgtttggagaagtattcaatgtttaa 334  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  20414579 ttagtttgggtgataatgtttggagaagtattaaaagtttaa 20414620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 327
Target Start/End: Original strand, 7327712 - 7327903
Alignment:
Q  136 aaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgtttgtgtttggttttgataattcaaccgacacatataagg 235  Q
    ||||| ||||||| |||||| | |||  |||||  |||||||  | |||| ||||||| |||||||||| ||| ||||||||||||| |||| |||||||    
T  7327712 aaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataagg 7327811  T
Q  236 ttgtggccttgaattgtga-agatgttttcaaaaaacctgaggttaaaatgagcatttttagtttgggtgataatgtttggagaagtattcaa 327  Q
    |||| |||||| ||| | | ||   |||| |  || ||| ||||| |  |||||||||||| |||||||||||||||||||| || |||||||    
T  7327812 ttgtagccttgcattataatagcaatttt-agcaatcctaaggttgaggtgagcatttttactttgggtgataatgtttggaaaactattcaa 7327903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 22525630 - 22525575
Alignment:
Q  195 gtttgtgtttggttttgataattcaaccgacacatataaggttgtggccttgaatt 250  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||| ||||| ||||    
T  22525630 gtttgtgtttggttatgataattcaaccgacacctataaagttgtagccttaaatt 22525575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 22534240 - 22534291
Alignment:
Q  199 gtgtttggttttgataattcaaccgacacatataaggttgtggccttgaatt 250  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  22534240 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaatt 22534291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 16846997 - 16846945
Alignment:
Q  103 atgtggtttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 155  Q
    |||||||| ||||||||||||||||| ||||||| ||| || |||||||||||    
T  16846997 atgtggttccgtttttggaaccctgctaccaggacaatatcagataaattagg 16846945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 21210799 - 21210751
Alignment:
Q  284 tgagcatttttagtttgggtgataatgtttggagaagtattcaatgttt 332  Q
    |||||||||||||||| ||||||||| |||||| || ||||||||||||    
T  21210799 tgagcatttttagtttaggtgataatatttggaaaactattcaatgttt 21210751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 24391010 - 24391050
Alignment:
Q  201 gtttggttttgataattcaaccgacacatataaggttgtgg 241  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  24391010 gtttggttttgataattcaacggacacatataaggtagtgg 24391050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 21210966 - 21210915
Alignment:
Q  118 tggaaccctgccaccaggaaaatttctgataaattaggatatttgcatgatg 169  Q
    |||||||| |||||||| || || |||||||||||||| |||||||||||||    
T  21210966 tggaaccccgccaccagaaatatatctgataaattagggtatttgcatgatg 21210915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 24391081 - 24391123
Alignment:
Q  290 tttttagtttgggtgataatgtttggagaagtattcaatgttt 332  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  24391081 tttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 13888676 - 13888635
Alignment:
Q  41 ttggtccctgcaatggattggtttgcttgcttggttattctc 82  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  13888676 ttggttcctgcaatggattggtctgcttgctcggttattctc 13888635  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 20338462 - 20338507
Alignment:
Q  110 ttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 155  Q
    |||||||||||||||||||||| |||||||| ||||  ||||||||    
T  20338462 ttcgtttttggaaccctgccacaaggaaaatatctgcaaaattagg 20338507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 13888626 - 13888574
Alignment:
Q  103 atgtggtttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 155  Q
    |||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||    
T  13888626 atgtggttccgtttctggaatcccgccaccagaaaaatatctgataaattagg 13888574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 21219353 - 21219285
Alignment:
Q  13 ttgaatgataagaattgtcgtaaatttattggtccctgcaatggattggtttgcttgcttggttattct 81  Q
    |||||||||||| ||||| || || || ||||| |||||||||||||||| || ||||  |||||||||    
T  21219353 ttgaatgataaggattgttgtgaagttgttggttcctgcaatggattggtctgtttgcgcggttattct 21219285  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 24383802 - 24383838
Alignment:
Q  289 atttttagtttgggtgataatgtttggagaagtattc 325  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  24383802 atttttagtttgggtgataatatttggaaaagtattc 24383838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 2910474 - 2910682
Alignment:
Q  49 tgcaatggattggtttgcttgcttggttattctcttgccgatca---taatgcagttatgtggtttcgtttttggaaccctgccaccaggaaaatttctg 145  Q
    |||||||||||||| ||||| |  ||||||||| || ||||| |   |||| || |||||||| | ||||| |||||||||||||| |||| ||| |||     
T  2910474 tgcaatggattggtctgcttacgcggttattcttttcccgatgaagataatacacttatgtggctccgtttgtggaaccctgccacaaggacaatatcta 2910573  T
Q  146 ataaattaggatatttgcatgatgacaattatagacggaactcttggatgtttgtgtttggttttgataattcaaccgacacatataaggttgtggcctt 245  Q
    |||||||||| | |||| |||||  | ||||||   ||   | |||||  || |||||||||| ||||||||||||  |||| |||||||||||||||||    
T  2910574 ataaattagggtttttgtatgatagcgattataattggtgtttttggaatttggtgtttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T
Q  246 gaattgtga 254  Q
    | |||||||    
T  2910674 ggattgtga 2910682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 11982139 - 11982094
Alignment:
Q  195 gtttgtgtttggttttgataattcaaccgacacatataaggttgtg 240  Q
    |||||||||||||| || |||||||| |||||| ||||||||||||    
T  11982139 gtttgtgtttggttatgttaattcaagcgacacttataaggttgtg 11982094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 8197 - 8248
Alignment:
Q  194 tgtttgtgtttggttttgataattcaaccgacacatataaggttgtggcctt 245  Q
    |||| |||||||||| ||||| |||||||||||| ||||| |||||||||||    
T  8197 tgttcgtgtttggttatgatagttcaaccgacacttataaagttgtggcctt 8248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 3656 - 3705
Alignment:
Q  106 tggtttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 155  Q
    ||||| ||||| |||||||| |||||||| ||||| ||||||||||||||    
T  3656 tggttacgtttctggaaccccgccaccagaaaaatatctgataaattagg 3705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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