View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19518_low_3 (Length: 252)
Name: NF19518_low_3
Description: NF19518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19518_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 24992744 - 24992914
Alignment:
| Q |
21 |
aaatgctccaggagaacccttggtaatgcaacaaattcttgtacaacctcctcagaaaatggaggttagaatcaagatcctctatacttccatttgtcac |
120 |
Q |
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| T |
24992744 |
aaatgctccaggagaacccttggtaatgcaacaaattcttgtacaacctcctcagaaaatggaggttagaatcaagatcctatatacttccatttgtcac |
24992843 |
T |
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| Q |
121 |
accgatctcagtggttggaaaggagaggtaagcacaattacacatctat---tatctacatttatatgcaa |
188 |
Q |
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| T |
24992844 |
actgatctcagtggttggaaaggcgaggtaatcacaattacacatttatttatatctacatttatatgcaa |
24992914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 24984541 - 24984683
Alignment:
| Q |
27 |
tccaggagaacccttggtaatgcaacaaattcttgtacaacctcctcagaaaatggaggttagaatcaagatcctctatacttccatttgtcacaccgat |
126 |
Q |
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||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
24984541 |
tccaggagaaccctttgtagtggaacaaattcttgtacaacctcctcagaaaatggaggttagaatcaagatcctatatacttccatttgtcacactgat |
24984640 |
T |
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| Q |
127 |
ctcagtggttggaaaggagaggtaagcacaattacacatctat |
169 |
Q |
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| T |
24984641 |
ctcagtggttggaaaggagaggtaaacacaaattcacatctat |
24984683 |
T |
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