View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_high_14 (Length: 428)
Name: NF19519_high_14
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 4897232 - 4896915
Alignment:
| Q |
13 |
aaaattaaattggccacacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg |
112 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4897232 |
aaaattaaattggccccacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg |
4897133 |
T |
|
| Q |
113 |
gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctct-tgacatcggttgccacacgtgtacaaaaatttgc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
4897132 |
gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctctctgacatcggttgccacacgtgtactaaaatttgc |
4897033 |
T |
|
| Q |
212 |
aatgccactattgataattatgctcttaatctcgtcttctccggaagttttcatacaaattctgagtatactacgtatacatttgtgatgattttattca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4897032 |
aatgccactattgataattatgctcttaatctcgtcttctctggaagttttcatactaattctgagtatactacgtatacatttgtgatgcttttattca |
4896933 |
T |
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| Q |
312 |
gaagctaattaagaacta |
329 |
Q |
| |
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|||||||||||||||||| |
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| T |
4896932 |
gaagctaattaagaacta |
4896915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 4944626 - 4944309
Alignment:
| Q |
13 |
aaaattaaattggccacacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg |
112 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4944626 |
aaaattaaattggccccacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg |
4944527 |
T |
|
| Q |
113 |
gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctct-tgacatcggttgccacacgtgtacaaaaatttgc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
4944526 |
gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctctctgacatcggttgccacacgtgtactaaaatttgc |
4944427 |
T |
|
| Q |
212 |
aatgccactattgataattatgctcttaatctcgtcttctccggaagttttcatacaaattctgagtatactacgtatacatttgtgatgattttattca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4944426 |
aatgccactattgataattatgctcttaatctcgtcttctctggaagttttcatactaattctgagtatactacgtatacatttgtgatgcttttattca |
4944327 |
T |
|
| Q |
312 |
gaagctaattaagaacta |
329 |
Q |
| |
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|||||||||||||||||| |
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| T |
4944326 |
gaagctaattaagaacta |
4944309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 14277832 - 14277869
Alignment:
| Q |
29 |
cacttatctcacaatatactccaaaaccatattttata |
66 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
14277832 |
cacttatctcacaatatactccaaaactatattttata |
14277869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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