View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_high_15 (Length: 425)
Name: NF19519_high_15
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 409
Target Start/End: Complemental strand, 41032528 - 41032132
Alignment:
| Q |
13 |
aatattgctactgtaacaaaaataaaaatatggaagtatttcttatcagtgatgaccagattgcagtcaacagattttggatattgggaagggatggact |
112 |
Q |
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| T |
41032528 |
aatattgctactataacaaaaataaaaatatggaagtatttcttatcagtgatgaccagattgcagtcaacagattttggatattgggaagggatggact |
41032429 |
T |
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| Q |
113 |
cataagaagcagaaaactttggagtaaggttgaaatcaagtgctatggcgttccagcgacttgatgaagggagaagtcgacctgcttctgaaactgtatg |
212 |
Q |
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| T |
41032428 |
cataagaagcagaaaactttggagtaaggttgaaatcaagtgctatggcgttccagcggcttgatgaagggagaagtcgacctgcttctgaaactgtatg |
41032329 |
T |
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| Q |
213 |
catatatcttacaggattcttctctgactctaattttggtggcatgattgatgaatatttttgtacttcagaagtgttgaataacaaaatggatcataca |
312 |
Q |
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| T |
41032328 |
catatatcttacaggattcttctctgactctaattttggtggcatgattgatgaagatttttgtacttcagaagtgttgaataacaaaatggatcataca |
41032229 |
T |
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| Q |
313 |
ctattcatagtttgatattgtacgtgtatttggttcatatgatataagcaaagtagcaaactatgcagttatttttcagagtttgaggtaatgtcta |
409 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41032228 |
ctattcatagtttgatattgtacgtatatttggttcatatgatataagcaaagtagcaaactatgcagttatttttcagagtttgaggtaatgtcta |
41032132 |
T |
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