View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_high_16 (Length: 422)

Name: NF19519_high_16
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_high_16
NF19519_high_16
[»] chr7 (3 HSPs)
chr7 (1-258)||(28949419-28949676)
chr7 (255-410)||(28949115-28949270)
chr7 (13-95)||(31861298-31861380)
[»] chr1 (1 HSPs)
chr1 (7-170)||(9846515-9846678)
[»] chr8 (1 HSPs)
chr8 (13-168)||(9321171-9321326)
[»] chr2 (2 HSPs)
chr2 (16-122)||(35711977-35712083)
chr2 (1-94)||(29939418-29939511)
[»] chr3 (2 HSPs)
chr3 (13-97)||(17747935-17748019)
chr3 (13-97)||(19049255-19049339)
[»] chr6 (1 HSPs)
chr6 (44-199)||(11008034-11008189)
[»] chr4 (1 HSPs)
chr4 (1-61)||(24173673-24173733)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 28949676 - 28949419
Alignment:
Q  1 aatgacatctcacttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatcccatg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28949676 aatgacatctctcttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatcccgtg 28949577  T
Q  101 atatttagaacatgcatctctaatgcagcttcttcaatcaacgaaatcttctatgactctgtcaacaccttaattcaaaccgccaaagggcccacctccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949576 atatttagaacatgcatctctaatgcagcttcttcaatcaacgaattcttctatgactctgtcaacaccttaattcaaaccgccaaagggcccacctccg 28949477  T
Q  201 acgtcaaaccttctgttaggtcaatataatatttttagaaattagacaataacatgta 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949476 acgtcaaaccttctgttaggtcaatataatatttttagaaattagacaataacatgta 28949419  T

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Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 255 - 410
Target Start/End: Complemental strand, 28949270 - 28949115
Alignment:
Q  255 tgtataatattgttagaaatttaaatcagacaatgacacatatatgtttatattcttttcatttcattttcgtgatgacgggaagagcaaataattttgt 354  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  28949270 tgtataatattgttagaaatctaaatcagacaatgacacatatatgtttatattcttttcatttcatcttcatgatgacgggaagagcaaataattttgt 28949171  T
Q  355 ctactcaatttgatttggattctaaatacgatgtcatccatgtagtaaatgagtat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949170 ctactcaatttgatttggattctaaatacgatgtcatccatgtagtaaatgagtat 28949115  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 31861298 - 31861380
Alignment:
Q  13 cttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatc 95  Q
    |||||| | ||||||| |||||||| || | |||||| |||||||| ||| ||||| ||||||||||| ||||||| ||||||    
T  31861298 cttcttatgtcatcaatcacaacccactttctttcttctggatcctttccaccctccccttatgtgctcgctctccacaaatc 31861380  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 9846515 - 9846678
Alignment:
Q  7 atctcacttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatcccatgatattt 106  Q
    ||||| |||||||||||||||  |||||||||||||||||||| ||||||||||||  | || | || |||||| |||||| ||||||||||||  ||||    
T  9846515 atctctcttcttctctcatcagtcacaaccctctctatttcttctggatcctctccgtcgtcccattttgtgctcgctctcagcaaatcccatggcattt 9846614  T
Q  107 agaacatgcatctctaatgcagcttcttcaatcaacgaaatcttctatgactctgtcaacacct 170  Q
     || |||||||||||| | || ||| ||| ||||  ||| |||| ||||| |||||||||||||    
T  9846615 ggatcatgcatctctactacaactttttccatcagtgaattcttttatgattctgtcaacacct 9846678  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 9321326 - 9321171
Alignment:
Q  13 cttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctcctta-tgtgcttgctctccgcaaatcccatgatatttagaac 111  Q
    |||||||||||||||  ||||||||||| | ||||||||||||||||||   |||| ||||| |||||| ||||| |||||||  | ||| |||| || |    
T  9321326 cttcttctctcatcagtcacaaccctctatctttcttatggatcctctctgtcctc-ccttactgtgctcgctcttcgcaaatatcgtgacatttggatc 9321228  T
Q  112 atgcatctctaatgcagcttcttcaatcaacgaaatcttctatgactctgtcaacac 168  Q
    |||||||||||     ||||||||||| ||| || ||||||||||||||||||||||    
T  9321227 atgcatctctataatggcttcttcaattaacaaattcttctatgactctgtcaacac 9321171  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 35711977 - 35712083
Alignment:
Q  16 cttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatcccatgatatttagaacatgc 115  Q
    ||||||||||||| |||||| |||||| |||||| | |||||||||| ||||| |||| |||||| | ||| ||||||||| |||| |||| || |||||    
T  35711977 cttctctcatcaatcacaactctctctctttcttctagatcctctccgccctccccttttgtgctcgttcttcgcaaatcctatgacatttggatcatgc 35712076  T
Q  116 atctcta 122  Q
    |||||||    
T  35712077 atctcta 35712083  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29939511 - 29939418
Alignment:
Q  1 aatgacatctcacttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaat 94  Q
    |||| |||||| |||||||||||||||  || |||||||||| |||||| |||||| ||||| ||||| |||| ||||||  ||||| ||||||    
T  29939511 aatggcatctctcttcttctctcatcagtcataaccctctctctttcttctggatcttctccaccctccccttctgtgctcactctctgcaaat 29939418  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 17748019 - 17747935
Alignment:
Q  13 cttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatccc 97  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||  | ||||| |||| |||||| ||||||| ||||||||    
T  17748019 cttcttctctcataaatcacaaccctctctatttcttttggatcctcgtcaccctccccttttgtgctcgctctccccaaatccc 17747935  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 19049339 - 19049255
Alignment:
Q  13 cttcttctctcatcaaccacaaccctctctatttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatccc 97  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||  | ||||| |||| |||||| ||||||| ||||||||    
T  19049339 cttcttctctcataaatcacaaccctctctatttcttttggatcctcgtcaccctccccttttgtgctcgctctccccaaatccc 19049255  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 11008034 - 11008189
Alignment:
Q  44 tttcttatggatcctctcctccctctccttatgtgcttgctctccgcaaatcccatgatatttagaacatgcatctctaatgcagcttcttcaatcaacg 143  Q
    |||||| |||||| | || ||||||  ||| |||||| ||| |||||||||||| | | |||| || ||||||||||||||||  |||||||||||| ||    
T  11008034 tttcttctggatcatatcatccctcctcttttgtgctcgctatccgcaaatcccgttacatttggagcatgcatctctaatgcgacttcttcaatcaccg 11008133  T
Q  144 aaatcttctatgactctgtcaacaccttaattcaaaccgccaaagggcccacctcc 199  Q
    || |||| |||||||||  |||||  |  ||||| |||||||| ||| ||||||||    
T  11008134 aattcttgtatgactctaccaacatttagattcacaccgccaatgggtccacctcc 11008189  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24173733 - 24173673
Alignment:
Q  1 aatgacatctcacttcttctctcatcaaccacaaccctctctatttcttatggatcctctc 61  Q
    |||| |||||| |||||||||||||||  || |||||| |||||||||| | |||||||||    
T  24173733 aatggcatctctcttcttctctcatcagtcataaccctatctatttcttctagatcctctc 24173673  T

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