View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_high_18 (Length: 413)
Name: NF19519_high_18
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 398
Target Start/End: Original strand, 26570671 - 26571064
Alignment:
| Q |
10 |
gcagagagctttttgtgtttgtttcaatgactgccattttttcttttcaaaaggttagaaagtgataatatacaagagtttatttgaaaacttgagtttc |
109 |
Q |
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| T |
26570671 |
gcagagagctttttgtgtttgtttcaatgactgccattttttcttctcaaaaggttagaaagtgataatatacaagagcttatttgaaaacttgagtttc |
26570770 |
T |
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| Q |
110 |
tgtttgctttttgccttcatatatatagcaaacaaagtaaccgattgagggagacaaaacgaatatttgtgttcctcaagtgtcacctaattagtatgaa |
209 |
Q |
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| T |
26570771 |
tgtttgctttttgccttcatat--atagcaaacaaagtaaccgattgagggagacaaaacgaatatttgtgttcctcaagtgtcacctaattagtatgaa |
26570868 |
T |
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| Q |
210 |
attatatcttcttgatttgaatctcagctacctcaccatgatctggcaatgctctccatgcatcaagcttccaactcatccctcaannnnnnngagggaa |
309 |
Q |
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| T |
26570869 |
attatatcttcttgatttgaatctcagctacctcaccatgatctggcaatgctctccatgcatcaagcttccaactcatccctcaattttttttagggaa |
26570968 |
T |
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| Q |
310 |
tagcgttgattttgataaaatggcatcattacaatataatactatatgcttagaa-------atgcatgcattgtaatcttttagtctatgaaatt |
398 |
Q |
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| T |
26570969 |
tagcgttgattttgataaaatggcatcattacaatataatactatatgcttagaaatgcattatgcatgcattgtaatcttttagtctatgaaatt |
26571064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 26568062 - 26568224
Alignment:
| Q |
130 |
atatatagcaaacaaagtaaccgattgagggagacaaaacgaatatttgtgttcctcaagtgtcacctaattagtatgaaattatatcttcttgatttga |
229 |
Q |
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| T |
26568062 |
atatatagtaaaaaaattaaccaattaaggaagacaagaagaatattgttgttcctcaaatgtcacctaatctgtatgcaattatataatcttgatttgg |
26568161 |
T |
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| Q |
230 |
atctcagctacctcaccatgatctggcaatgctctccatgcatcaagcttccaactcatccct |
292 |
Q |
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| T |
26568162 |
atcttagctaccttgccgtgatctggtaatgctccacttgcatgatacttccaactcatccct |
26568224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 44690906 - 44691063
Alignment:
| Q |
130 |
atatatagcaaacaaagtaaccgattgagggagacaaaacgaatatttgtgttcctcaagtgtcacctaattagtatgaaattatatcttcttgatttga |
229 |
Q |
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| T |
44690906 |
atatatagcaaaagaagtaaccaattatgggagacaagaagaatatttatgttcctcgaatgtcaccta-tccgtacgcaattatatcatcttgatttgg |
44691004 |
T |
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| Q |
230 |
atctcagctacctcaccatgatctggcaatgctctccatgcatcaagcttccaactcat |
288 |
Q |
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| T |
44691005 |
atcttagctacctcaccattatttgttaatgttcctcatgcatgatgcttccaactcat |
44691063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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