View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19519_high_21 (Length: 337)
Name: NF19519_high_21
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 28372211 - 28372517
Alignment:
| Q |
19 |
cacagatcgtcgaagtttacgtccgtgtcaccggaggcgaagtcggcgccgccagttccctcgctcccaagatcggaccactcggtctctctccaaaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28372211 |
cacagatcgtcgaagtttacgtccgtgtcaccggaggcgaagtcggcgccgccagttccctcgctcccaagatcggaccactcggtctctctccaaaaaa |
28372310 |
T |
|
| Q |
119 |
gataggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtgtcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggtt |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28372311 |
gatcggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtgtcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggtt |
28372410 |
T |
|
| Q |
219 |
gttccctccgcggcggcgctggtgattaaggcattgaaggaaccagagagagataggaagaagactaagaatattaagcataatgggaatatttcgcttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28372411 |
gttccctccgcggcggcgctggtgattaaggcattgaaggaaccagagagagataggaagaagactaagaatattaagcataatgggaatatttcgcttg |
28372510 |
T |
|
| Q |
319 |
atgatgt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
28372511 |
atgatgt |
28372517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 21783159 - 21783460
Alignment:
| Q |
24 |
atcgtcgaagtttacgtccgtgtcaccggaggcgaagtcggcgccgccagttccctcgctcccaagatcggaccactcggtctctctccaaaaaagatag |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| | |
|
|
| T |
21783159 |
atcgtcgaagtttacgtccgcgtcaccggcggtgaagtcggagccgccagttccctcgctcccaagatcggtcctctcggtctctcaccaaagaagatcg |
21783258 |
T |
|
| Q |
124 |
gagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtgtcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggttgttcc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| | || ||||||||||||||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
21783259 |
gagaagacatcgccaaagaaaccgcaaaggattggaagggtctgagggtgacagtcaagctcaccgttcagaatcgtcaggctaaggtcgctgttgttcc |
21783358 |
T |
|
| Q |
224 |
ctccgcggcggcgctggtgattaaggcattgaaggaaccagagagagataggaagaagactaagaatattaagcataatgggaatatttcgcttgatgat |
323 |
Q |
| |
|
|| ||||| |||||||| || ||||| |||||||||||||| || ||| | |||||||||||||| || ||||||||||||||||| || ||||||||| |
|
|
| T |
21783359 |
gtctgcggctgcgctggttatcaaggctttgaaggaaccagaaagggatcgcaagaagactaagaacatcaagcataatgggaatatctctcttgatgat |
21783458 |
T |
|
| Q |
324 |
gt |
325 |
Q |
| |
|
|| |
|
|
| T |
21783459 |
gt |
21783460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 40220254 - 40220103
Alignment:
| Q |
72 |
agttccctcgctcccaagatcggaccactcggtctctctccaaaaaagataggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtg |
171 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||||| ||||||||||||||||||||||| || || | || || ||||||||||||||| || | | |
|
|
| T |
40220254 |
agttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgccaaagactggaagggtatcaggg |
40220155 |
T |
|
| Q |
172 |
tcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggttgttcc |
223 |
Q |
| |
|
| |||| |||||||| ||| || |||||||| ||| || ||| ||| ||||| |
|
|
| T |
40220154 |
tgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttcc |
40220103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University