View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19519_high_25 (Length: 291)
Name: NF19519_high_25
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 38933053 - 38933310
Alignment:
| Q |
25 |
ctctcaaacaaacttctaaataaaggtctgaatattcatgagttattttattgactgaatttcatagaatatttatacaatttaattgatggaaaagaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38933053 |
ctctcaaacaaacttctaaataaaggtctgaatattcatgagttattttattgactgaatttgatagaatatttatacaa-ttaattgatggaaaagaaa |
38933151 |
T |
|
| Q |
125 |
gctagttattggtaactaactttctgttttatac------aagaaaaagattatcaaactattttgaattggtctttagtctccttttacactcccttgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38933152 |
gctagttattggtaactaactttctgttttatacaacaagaaaaaaaagattaacaaactattttgaattggtctttggtctccttttacactcccttgc |
38933251 |
T |
|
| Q |
219 |
aaactcatggatgaatgattatgaactc--taagtttatagcaacattgaagaactatc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38933252 |
aaactcatggatgaatgattatgaactctttaagtttatagcaacattgaagaactatc |
38933310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University