View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_high_28 (Length: 279)
Name: NF19519_high_28
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 263
Target Start/End: Complemental strand, 10573781 - 10573521
Alignment:
| Q |
4 |
tcaattccacccccaaattgaacc-taattcattctctcacaacaacaatgaacaacccaactgatctcagctcacccaatcgcaaaccagaagctgaac |
102 |
Q |
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| T |
10573781 |
tcaatttcacccccaaattgaaccctaattcattctctcacaacaacaatgaacaacccaactgatctcagctcacccaatcgcaaaccagaagctgaac |
10573682 |
T |
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| Q |
103 |
aacaacaacaaggatcatgcactccggaaaacaccttcaagaagagaaaatccccttcaaaatccactcctcggnnnnnnncctccagggtaatttaatc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10573681 |
aacaacaacaaggatcatgcactccggaaaacaccttcaagaagagaaaatccccttcaaaatccactcctcggaaaaaaacctccagggtaatttaatc |
10573582 |
T |
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| Q |
203 |
atcacaattgttattattactgtgtttttgttgttgttatgctgttaattttagctgtaat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10573581 |
atcacaattgttattattactgtgtttttgttgttgttatgctgttaattttagctgtaat |
10573521 |
T |
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