View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_high_29 (Length: 271)
Name: NF19519_high_29
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 28534512 - 28534271
Alignment:
| Q |
18 |
ttaacaaaatgtagctactagctaatcatatatattataataaagtacaactataacttcaatgttggatttgataacttttgacgtttcttgcaatatc |
117 |
Q |
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| T |
28534512 |
ttaacaaaatgtagctactagctaatcatatat--tataatatagtacaactataacttcaatgttggatttgataacttttgacgtttcttgcaatatc |
28534415 |
T |
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| Q |
118 |
tccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacatagttaaattatcatatgattatgattatatcag--at |
215 |
Q |
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| T |
28534414 |
tccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacatagttaaattatcatatgattatgattatatcagatat |
28534315 |
T |
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| Q |
216 |
ccatggattttaaaacacaaattggaatatgagaaaatatgata |
259 |
Q |
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| T |
28534314 |
ccatggatttcaaaacacaaattggaataagagaaaatatgata |
28534271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 27917294 - 27917227
Alignment:
| Q |
114 |
tatctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacata |
181 |
Q |
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| T |
27917294 |
tatctccatgcaacctgaattctcgttgctgcaagggatctccaataaggtgattcatacctaacata |
27917227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 28047576 - 28047511
Alignment:
| Q |
116 |
tctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacata |
181 |
Q |
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| T |
28047576 |
tctccatgcaacctgaattctgtttgctgcaagtgatctccaataaggtgattgatacctaacata |
28047511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 28035681 - 28035618
Alignment:
| Q |
117 |
ctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacat |
180 |
Q |
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| T |
28035681 |
ctccatgcaacctgaattctgtttgctgcaagtgatctccaataaggtgattgatacctaacat |
28035618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 28074716 - 28074651
Alignment:
| Q |
116 |
tctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacata |
181 |
Q |
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| T |
28074716 |
tctccatgcatcctgaattctttttgctgcaaggaatctccaataaggtgattcatacctaacata |
28074651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 28091742 - 28091661
Alignment:
| Q |
100 |
gacgtttcttgcaatatctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacata |
181 |
Q |
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| T |
28091742 |
gacgtttcttcctgtatctccatgcaacccgaattctatttgctgcaagtgatctccagtaagttgattcatacctaacata |
28091661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 28017936 - 28017871
Alignment:
| Q |
116 |
tctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacata |
181 |
Q |
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| T |
28017936 |
tctccatgcatcctgaattacctttgctgcaagtgatctccaataaggtgattgatacctaacata |
28017871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 27897859 - 27897782
Alignment:
| Q |
100 |
gacgtttcttgcaatatctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaa |
177 |
Q |
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| T |
27897859 |
gacgtttctttctgtatctccacgcaacctggattcgcgtagcggcgagacatctccagtaaggtgattcatacctaa |
27897782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 1440143 - 1440075
Alignment:
| Q |
114 |
tatctccatgcaacctgaattcgggttgctgctagggatctccaataaggtgattcatacctaacatag |
182 |
Q |
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| T |
1440143 |
tatctccatgcaacccgaattctgtttgctgcaagtgatctccaatatgtggattcatacctaacatag |
1440075 |
T |
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