View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_high_3 (Length: 820)
Name: NF19519_high_3
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 552 - 820
Target Start/End: Original strand, 10593014 - 10593283
Alignment:
| Q |
552 |
atgaagcatgtaattataattagtaaaggctagagtattagagagctaaattacagatactgatttggttcatgaaagtgtttaatttttaatcttaatt |
651 |
Q |
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| T |
10593014 |
atgaagcatgtaattataattagtaaaggctagagtattaggaagctaaattacatatactaatttggttcatgaaagtgtttaatttttaatcttaatt |
10593113 |
T |
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| Q |
652 |
attttctaaggttgggtagctcaaatgtttttgatagctgtatgaaattaagggtgtgatgatttt-ggggggtttagttagtaatgggataatgctgct |
750 |
Q |
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| T |
10593114 |
attttctaaggttgggcagctcaaatgtttttgatagctgtatgaaattaagggtgttatgattttgggggggtttagttagcaatgggataatgctgct |
10593213 |
T |
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| Q |
751 |
ggattttgaaattttgataatctgtttgttgttaataatagacactgttttggtttgatgagaattaatt |
820 |
Q |
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| T |
10593214 |
ggattttgagattttgataatctgtttgttgttaataatagacactgttttggttttatgagaattaatt |
10593283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 10592506 - 10592659
Alignment:
| Q |
62 |
attccaaactactttgactatttgagactttatgtaacattatcagaaagtacagtacatacctagatagatatgtttagttttgtgtctccgtcatatg |
161 |
Q |
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| T |
10592506 |
attccaagctaatttgactatttgagactttatgtaacattatcagaaagtacagtacatacctagatagatatgtttagttttgtgtctccgtcatatg |
10592605 |
T |
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| Q |
162 |
cggtaacgtcccttttcgtcccacccaaatgcattgaactttgactaccacatgc |
216 |
Q |
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| T |
10592606 |
cggtaacgtcccttttcgacccacccaaatgcattgaac-ttgactaccacatgc |
10592659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 283 - 394
Target Start/End: Original strand, 10592728 - 10592839
Alignment:
| Q |
283 |
aacttgttcctgcaacactattcgtttcttttcctgtctcttccttcagttttcttccattattctcttgcagattatattcatttcatttccatgtaag |
382 |
Q |
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| T |
10592728 |
aacttgttcctgcaacactattcgtttcttttcctgtctcttccttcagttttcttccattattctcttgcagattatattcatttcatttccatgtaag |
10592827 |
T |
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| Q |
383 |
tttcaagatcac |
394 |
Q |
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| T |
10592828 |
tttcaagatcac |
10592839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 412 - 461
Target Start/End: Original strand, 10592877 - 10592926
Alignment:
| Q |
412 |
tattttatttctaaatttaattcactattccacctcctccttaatttgtt |
461 |
Q |
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| T |
10592877 |
tattttatttctaaatttatttcactattccacctcctccttaatttgtt |
10592926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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