View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_high_34 (Length: 241)

Name: NF19519_high_34
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_high_34
NF19519_high_34
[»] chr7 (3 HSPs)
chr7 (80-221)||(28950434-28950581)
chr7 (1-86)||(28949671-28949756)
chr7 (24-111)||(31861178-31861267)
[»] chr1 (1 HSPs)
chr1 (31-108)||(9846405-9846484)
[»] chr2 (2 HSPs)
chr2 (155-221)||(38179743-38179809)
chr2 (154-221)||(35711737-35711804)
[»] chr5 (1 HSPs)
chr5 (156-221)||(10927857-10927922)
[»] chr4 (1 HSPs)
chr4 (154-221)||(43108206-43108273)
[»] chr3 (2 HSPs)
chr3 (13-108)||(17748038-17748136)
chr3 (13-108)||(19049358-19049456)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 28950434 - 28950581
Alignment:
Q  80 atgagggcagattaaagagatatgttttattgta------acacttgacttcttgcatgtaattttaatgacannnnnnnactgcatggataacaatcga 173  Q
    |||||||||||  |||||||||||||||||||||      ||||||||||||||||||||||| |||||||||       ||||||||||||||||| ||    
T  28950434 atgagggcagaagaaagagatatgttttattgtatgaataacacttgacttcttgcatgtaatcttaatgacacttttttactgcatggataacaattga 28950533  T
Q  174 attgttgcatgcattcgtcatgacatttgagttattgtatgagtaaca 221  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28950534 attgttgcatgcattcgtcatgacatttgagttattgcatgagtaaca 28950581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 28949671 - 28949756
Alignment:
Q  1 gtcattttcagaagaaaacaatgagatgaaagagagtggaggttttgtgagttaatgaaaaagaaagagggtgggattcatgaggg 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28949671 gtcattttcagaagaaaacaatgagatgaaagagagtggaggttttgtgagttaatgaaaaagaaagggggtgggattcatgaggg 28949756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 31861267 - 31861178
Alignment:
Q  24 agatgaaagagagtggaggttttg-tgagttaatgaaaaagaaagagggtgg-gattcatgagggcagattaaagagatatgttttattg 111  Q
    |||||| ||||||||| ||||||| |||||| |||| ||||| || |||| | |||| ||||||| |||  |||||||||||||||||||    
T  31861267 agatgatagagagtgggggttttggtgagttcatgagaaagagagggggttgagatttatgagggaagaagaaagagatatgttttattg 31861178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 9846484 - 9846405
Alignment:
Q  31 agagagtggaggttttg-tgagttaatgaaaaagaaagaggg-tgggattcatgagggcagattaaagagatatgtttta 108  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||| |||||||| ||  ||||||||||||||||    
T  9846484 agagagtggaggttttggtgagttcatgaaaaagaaagagggttgggattaatgagggctgaagaaagagatatgtttta 9846405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 38179809 - 38179743
Alignment:
Q  155 ctgcatggataacaatcgaattgttgcatgcattcgtcatgacatttgagttattgtatgagtaaca 221  Q
    |||||||||||| ||| |  ||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  38179809 ctgcatggataaaaattgggttgttgcatgcattcctcatgacgtttgagttattgaatgagtaaca 38179743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 35711804 - 35711737
Alignment:
Q  154 actgcatggataacaatcgaattgttgcatgcattcgtcatgacatttgagttattgtatgagtaaca 221  Q
    |||| |||||||||||| |  ||||||||||||||| || ||||||||| ||||||| ||| ||||||    
T  35711804 actggatggataacaattggcttgttgcatgcattcctcgtgacatttgggttattgcatgggtaaca 35711737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 10927857 - 10927922
Alignment:
Q  156 tgcatggataacaatcgaattgttgcatgcattcgtcatgacatttgagttattgtatgagtaaca 221  Q
    ||||||||||||||| || ||||||||||||||  |||| ||||||||||||||| ||| ||||||    
T  10927857 tgcatggataacaattgagttgttgcatgcatttctcataacatttgagttattgcatgggtaaca 10927922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 43108273 - 43108206
Alignment:
Q  154 actgcatggataacaatcgaattgttgcatgcattcgtcatgacatttgagttattgtatgagtaaca 221  Q
    ||||| ||||||||||| |  ||||||||||||||| || ||||||||| ||||||||||| ||||||    
T  43108273 actgcgtggataacaattgggttgttgcatgcattcctcgtgacatttgggttattgtatgggtaaca 43108206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 17748038 - 17748136
Alignment:
Q  13 agaaaacaatgagatgaaagagagtgg-aggttttgt-gagttaatgaaaaagaaagagggt-gggattcatgagggcagattaaagagatatgtttta 108  Q
    |||||| ||||||| |||||||||||| ||||||||  ||||| |||| ||||| ||||| | |||||||||| ||| |||  ||||||||||||||||    
T  17748038 agaaaaaaatgagacgaaagagagtggcaggttttggcgagttcatgagaaagagagaggtttgggattcatgtgggaagaagaaagagatatgtttta 17748136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 19049358 - 19049456
Alignment:
Q  13 agaaaacaatgagatgaaagagagtgg-aggttttgt-gagttaatgaaaaagaaagagggt-gggattcatgagggcagattaaagagatatgtttta 108  Q
    |||||| ||||||| |||||||||||| ||||||||  ||||| |||| ||||| ||||| | |||||||||| ||| |||  ||||||||||||||||    
T  19049358 agaaaaaaatgagacgaaagagagtggcaggttttggcgagttcatgagaaagagagaggtttgggattcatgtgggaagaagaaagagatatgtttta 19049456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University