View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19519_high_5 (Length: 744)
Name: NF19519_high_5
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 45392709 - 45393121
Alignment:
| Q |
16 |
caaagtgatgataaacaaatgctttctgtttattcctctctctgaaaagacctattccccacaaaaaccctaacactgattgtgcagccgggtgaccaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45392709 |
caaagtgatgataaacaaatgctttctgtttgttcctctctctgaaaagacctattccccacaaaaaccctaacactgattgtgcagccgggtgaccaga |
45392808 |
T |
|
| Q |
116 |
ttctgcagctgtttcaatctcgccggagccctcttctatgatcctggcatccccagtcattagcttagtgacggcggagtagtagagagcgtcggtatc- |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45392809 |
ttctgcagctgtttcaatctcgccggagccctcttctatgatcctggcatccccagtcattagcttagtaacggcggagtagtagagagcgtcggtatcg |
45392908 |
T |
|
| Q |
215 |
-----------ggattgggattgggattgggggtcggtggtggagggttcgaagatttggcgccatgagccaggatcgagatcttcttcggatttgtggg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45392909 |
gattgggattgggattgggattgggattgggggtcggtggtggagggttcgaagatttggcgccatgagccaggatcgagatcttcttcggatttgtggg |
45393008 |
T |
|
| Q |
304 |
agtcggagtcgccgaattcatcccactcggcggaagaggaatcggaatcagcgggaacttcgtccttgaagtcttcctgggaaaggacgagaacgtaggg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393009 |
agtcggagtcgccgaattcatcccactcggcggaagaggaatcggaatcagcgggaacttcgtctttgaagtcttcctgggaaaggacgagaacgtaggg |
45393108 |
T |
|
| Q |
404 |
acgagcggcgacg |
416 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45393109 |
acgagcggcgacg |
45393121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 488 - 679
Target Start/End: Original strand, 45393193 - 45393402
Alignment:
| Q |
488 |
tttgataattacaaacattcagagagagaaagaaagaaag----gattggaagcaaatcaatactacaat---------------tcaaatcaggaacga |
568 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45393193 |
tttgataattacaa-cattcagagaaagaaagaaagaaagaaaggattggaagcaaatcaatactacaatgcaattcaattcaattcaaatcaggaacga |
45393291 |
T |
|
| Q |
569 |
gaaatgtgaggggggccatgacacgtacatttgcgttattcctaccaataccaaccgtccaactcatcactcttcacatannnnnnngaggtaacaagtg |
668 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45393292 |
gaaatgtgaggggggccatgacacgtacatttgcgttattcctaccaataccaaccgtccaactcatcactcttcacatatttttttgaggtaacaagtg |
45393391 |
T |
|
| Q |
669 |
catttacttcc |
679 |
Q |
| |
|
||||||||||| |
|
|
| T |
45393392 |
catttacttcc |
45393402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University