View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19519_low_1 (Length: 1029)
Name: NF19519_low_1
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 751; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 17 - 982
Target Start/End: Original strand, 1743065 - 1744035
Alignment:
| Q |
17 |
agttgcaacagtcttgcaagacaagttttttcagacaatcagcagaagcgtttgcgactgagataagaaactcatctgatataaaagaatttgacaaatc |
116 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| ||| | ||| | ||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1743065 |
agttgcaacagtcttgaaggacaagttttttcagaaaattaacagcaccgtctgcgactgagataagaaactcatccgatataaaagaatttgataaatc |
1743164 |
T |
|
| Q |
117 |
aatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttcttttcaatg |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1743165 |
aatagcatttaatcttttcaagctcacgaatgaatcgatcaaatccaagttaataggtaagggagtcaaaccaggtccatgtattcttttcttttcgatg |
1743264 |
T |
|
| Q |
217 |
ttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaatttcttccaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1743265 |
ttaaaagaaatggaagacaaacttggcctcattcggatagcagaagcaattccatcttgggatatcttgaagcattggaagaatgaaatttcttccaatg |
1743364 |
T |
|
| Q |
317 |
atctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctgcgcagattctcaagcatggaagatagcct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||| |
|
|
| T |
1743365 |
atctgcagttctggcatagagacaaaagagatttatcagtgatcaagtgattaccagaaagatcgatcttgcacagattctcaagcatggaagacagcct |
1743464 |
T |
|
| Q |
417 |
tagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatcg |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
1743465 |
tagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatcg |
1743564 |
T |
|
| Q |
517 |
cgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaa |
616 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1743565 |
cgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaa |
1743664 |
T |
|
| Q |
617 |
gattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgagacttaa |
716 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
1743665 |
gattaatcaaatcaaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatggctttgagccttaa |
1743764 |
T |
|
| Q |
717 |
aaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagacc |
816 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
1743765 |
aaatctcgagagtagccgagaaaggaatagaatagtggaatcatgtattgttaaagaaaatttcacttggtttgtaatggaaaggaatttcttgcagacc |
1743864 |
T |
|
| Q |
817 |
atagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatataat-- |
914 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
1743865 |
atagaaacagactccaaatcttttccttggccaaggaatttgaagattgattcccaacattcttgaggaaaatctttcaataacatatttgatataataa |
1743964 |
T |
|
| Q |
915 |
---ttgatctagaaagttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataa |
982 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
1743965 |
atgttgatctagaaagttaagatgagaatgatcaacaaatttaatggcttaatcatttataaactcaataa |
1744035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 17 - 912
Target Start/End: Complemental strand, 2007317 - 2006422
Alignment:
| Q |
17 |
agttgcaacagtcttgcaagacaagttttttcagacaatcagcagaagcgtttgcgactgagataagaaactcatctgatataaaagaatttgacaaatc |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||| ||| | | ||||| |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
2007317 |
agttgcaacagtcttgcaggacaagttttttcagacactcaacagcaccctttgcaactgagataagaaactcatccgatataaaggaatttgacaaatc |
2007218 |
T |
|
| Q |
117 |
aatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttcttttcaatg |
216 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2007217 |
aatagcttttaatctcttcaagctcacgaatgaatcgatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtcttcttttcttttcaatg |
2007118 |
T |
|
| Q |
217 |
ttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaatttcttccaatg |
316 |
Q |
| |
|
||||| || || |||| |||||||||| |||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||||| || |
|
|
| T |
2007117 |
ttaaaggatatcgaagccaaacttggcatcattcggatcgcagaagcaattccaacttgggatattttgaaacattggaagaataaaatttcttccagtg |
2007018 |
T |
|
| Q |
317 |
atctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctgcgcagattctcaagcatggaagatagcct |
416 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || | ||||||||||| |||||||| || ||||||||||||| |||||||||||| ||| |
|
|
| T |
2007017 |
atctacagttctggcatagagacaaaagggatttatcggtggttaagtgattaccagaaagatcaattttgcgcagattctcgagcatggaagattacct |
2006918 |
T |
|
| Q |
417 |
tagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatcg |
516 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
2006917 |
tattaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatcg |
2006818 |
T |
|
| Q |
517 |
cgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaa |
616 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
2006817 |
caaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctcgcaatccatcaacaggaactgttctctggttggaaa |
2006718 |
T |
|
| Q |
617 |
gattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgagacttaa |
716 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||| ||||||||| | | |||| ||||||||||||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
2006717 |
gattaacgaaatcaaggtccagcccagattgtgaaacttgatgaagcaagccttcaagttcaccattgaagtggctaaaatctaagactttgagccttaa |
2006618 |
T |
|
| Q |
717 |
aaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagacc |
816 |
Q |
| |
|
||||| | |||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2006617 |
aaatcccaagagtagccgaggaaggaatggaacagtgggatcatgtactgttagagatgctttaactcggtttgtaatggaaaggaatttcttgcagacc |
2006518 |
T |
|
| Q |
817 |
atagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatata |
912 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | | ||||||||||||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
2006517 |
atagaaacagactccaaatcatctccttggccaaggaatcttaagattgattcccaacattcttgaggaaaatctttcactaatatatttgatata |
2006422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 73 - 307
Target Start/End: Complemental strand, 1498709 - 1498475
Alignment:
| Q |
73 |
actgagataagaaactcatctgatataaaagaatttgacaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaatag |
172 |
Q |
| |
|
|||||||||||||| ||| || |||||||| ||||| ||| ||||||| ||||||| || || || ||||||||||| |||||||||| ||||||| |
|
|
| T |
1498709 |
actgagataagaaaaccattcgagataaaagagtttgagaaaccaatagcttttaatcattttaaactagcgaatgagtcagtcaaatccaatttaatag |
1498610 |
T |
|
| Q |
173 |
gtaggggtgtcaaaccaggtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagc |
272 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||| || | ||| ||| ||| || ||| ||| | |
|
|
| T |
1498609 |
gtaggggtttcaatccaggtccatgtagtcttttcttttcaacgttaaaagaaatggaacccaaactaggaattattttgattgcacaaacaaggccaac |
1498510 |
T |
|
| Q |
273 |
ttgggatatcttgaaacattggaagaatgaaattt |
307 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||| |
|
|
| T |
1498509 |
ttgggttatcttaaaacatgtgaagaatgaaattt |
1498475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 927 - 1005
Target Start/End: Original strand, 1749110 - 1749187
Alignment:
| Q |
927 |
gttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataaaccaatcatatttgagtgaaagt |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||||| || |||| ||||||||| |
|
|
| T |
1749110 |
gttaagatgagaatgatcaacaaatgtaatggcttaataatttcttagctcaatgaaccaaccacattt-agtgaaagt |
1749187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 614 - 710
Target Start/End: Complemental strand, 1498419 - 1498323
Alignment:
| Q |
614 |
aaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgag |
710 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||| | ||||||||||||| | | ||||||||| ||| ||||||| |||| |||||||||||||| |
|
|
| T |
1498419 |
aaagattaaccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctatgactttgag |
1498323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 374024 - 373967
Alignment:
| Q |
113 |
aatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaat |
170 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| | ||||||| ||||||||| |
|
|
| T |
374024 |
aatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaat |
373967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 624 - 689
Target Start/End: Complemental strand, 44577603 - 44577538
Alignment:
| Q |
624 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
689 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
44577538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University