View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_10 (Length: 529)
Name: NF19519_low_10
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 140 - 512
Target Start/End: Original strand, 751377 - 751730
Alignment:
| Q |
140 |
cacatcacatggattaacaaaattgagaataaaatcaggggtgatttgggaaacaaaattctcttgatcttttataaaaaatatcaaacatacaaacata |
239 |
Q |
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| T |
751377 |
cacatcacatggattaaaaaaattgagaataaaatcaggggtgatttgggaaacaaaattctcttgatcttttataaaatatg----------aaacata |
751466 |
T |
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| Q |
240 |
catgataaagagagatagaagaagaaaatagtaagtaacctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataatacatgaaat |
339 |
Q |
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| T |
751467 |
catgataaagagagatag-------------taagtaacctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataatacatgaaat |
751553 |
T |
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| Q |
340 |
tatgacgatcggagtaatctttgcctcaaattcacctccgccactcgtggcgaagcctccaccagccatggttaatttgcctaatagt------atgcaa |
433 |
Q |
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| T |
751554 |
tatgacgatcggagtaatctttgcctcaaattcacctccgccactcgtggcgaagcctccaccagccatggttaatttgcctaaaagtatgcaaatgcaa |
751653 |
T |
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| Q |
434 |
tgaagaaaataaataaataagagagaagaaatatttatgtatgagttattatgagatgaaagtattgagagtgttgagt |
512 |
Q |
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| T |
751654 |
tgaggaga--aaataaataagagagaagaaatatgtatgtatgagttattatgagatgaaagtatagagagtgttgagt |
751730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 751189 - 751320
Alignment:
| Q |
14 |
aatatattaatataattttcatattaatttgttgttttaatttaagtcaaaacaaaattaattgg-nnnnnnnnggataagaatgaaagaaattagtagt |
112 |
Q |
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| T |
751189 |
aatatattaatataattttcatattaatttgttgttttaatttaagtcaaaacaaaattaattggtttttttttggataagaaagaaagaaattagtagt |
751288 |
T |
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| Q |
113 |
tgagagatttagggaactgaactgactcacat |
144 |
Q |
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| T |
751289 |
tgagagatttagggaactgaactgactcacat |
751320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 47207597 - 47207502
Alignment:
| Q |
277 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataatacatgaaattatgacgatcggagtaatctttgcctcaaattc |
372 |
Q |
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| T |
47207597 |
acctgaaactccaacatcgtaaccaaacataagacctccggtggcagccattatgcatgaaatgataatgataggagttatctttgcctcaaattc |
47207502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 47196740 - 47196690
Alignment:
| Q |
277 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccat |
327 |
Q |
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| T |
47196740 |
acctgaaataccaacatcataaccaaacataagaccaccagtagcagccat |
47196690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 47183852 - 47183799
Alignment:
| Q |
277 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataat |
330 |
Q |
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| T |
47183852 |
acctgaaataccaatatcataaccaaacataagaccaccgaaagcagccataat |
47183799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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