View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_11 (Length: 528)
Name: NF19519_low_11
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 40553431 - 40552923
Alignment:
| Q |
1 |
aggatgcatgattcaccttgaaatgttggtgttctcgagcagttctacaagcttatcagattggctaaaatgaactatcttgtaaataacagaaaggcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40553431 |
aggatgcatgattcaccttgaaatgttggtgttctcgagcagttctacaagcttatcagattggctaaaatgaactatcttgtaaataacagaaaggcat |
40553332 |
T |
|
| Q |
101 |
ccatgacaaacatatgtatttggatctgaattaaccacctgtcaagggtgaagtacaaaataaaatgtagcnnnnnnnnnnnnnnnnnnagaaaaggtct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
40553331 |
ccatgacaaacatatgtatttggatctgaattaaccacctgtcaagggtgaagtacaaattaaaatgtagctttttattttttatttttagaaaaggtct |
40553232 |
T |
|
| Q |
201 |
gcgacaacaattcatattgcaatatcaaggtttttgatgtctcagcgactctaattgctattgagtccgcatcaaccacatttgatcattattcttcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40553231 |
gcgacaacaattcatattgcaatatcaaggtttttgatgtctcagcgactttaattgctattgagtccgcatcaaccacatttgatcattattcttcttc |
40553132 |
T |
|
| Q |
301 |
tcaatatatggcacaaccacaatttaaaaccttgataataacaagaaattcaaccaacctggatcaaccgaggaagtgcatccatcacaagcttttctat |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40553131 |
tcaatatatggcacaaccacaatttaaaaccttgataataacaagaaagtcaaccaacctggatcaaccgaggaagtgcatccatcgcaagcttttctat |
40553032 |
T |
|
| Q |
401 |
gagatacgggcgatcagctaaaaatgattctttgtctagcactagaggatcattctgattttcagtcacctcaggaagaagcacatttagcagcttgagc |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40553031 |
gagatacgggcgatcagctaaaaatgattctttgtctagcactagaggatcattctgattttcagtcacctcaggaagaagcacatttagcagcttgagc |
40552932 |
T |
|
| Q |
501 |
acttcatat |
509 |
Q |
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||||||||| |
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| T |
40552931 |
acttcatat |
40552923 |
T |
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