View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_14 (Length: 430)

Name: NF19519_low_14
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_14
NF19519_low_14
[»] chr3 (2 HSPs)
chr3 (155-405)||(45633605-45633855)
chr3 (1-154)||(11136583-11136736)
[»] chr2 (2 HSPs)
chr2 (1-154)||(7314064-7314217)
chr2 (268-337)||(19185153-19185220)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-85)||(245939-246023)
[»] chr7 (1 HSPs)
chr7 (1-85)||(37282175-37282259)
[»] chr5 (1 HSPs)
chr5 (15-85)||(40933961-40934032)
[»] chr6 (1 HSPs)
chr6 (15-85)||(11232957-11233029)
[»] chr1 (1 HSPs)
chr1 (10-85)||(23348366-23348440)
[»] scaffold0716 (1 HSPs)
scaffold0716 (1-35)||(7245-7279)
[»] chr4 (1 HSPs)
chr4 (226-318)||(29384816-29384906)
[»] scaffold0894 (1 HSPs)
scaffold0894 (1-34)||(1-34)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 155 - 405
Target Start/End: Complemental strand, 45633855 - 45633605
Alignment:
Q  155 gagaaatgatagatcgaccactttgttttgtacaccctttactacacctgctgatgtggcatcttttgcctggtggaaattaaattatttttcatttaaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45633855 gagaaatgatagatcgaccactttgttttgtacaccctttactacacctgctgatgtggcatcttttgcctggtggaaattaaattatttttcatttaaa 45633756  T
Q  255 aaacatattacaaatcaaaccttacacaccctttctctctcactttcatttatcagtttaatttcttctccgctctctatctctcagttccaatttccag 354  Q
    ||||| | |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45633755 aaacaaaatacatattaaaccttacacaccctctctctctcactttcatttatcagtttaatttcttctccgctctctgtctctcagttccaatttccag 45633656  T
Q  355 ccaaccatgtagccgccttcactgcaaacgacaccacactcgtgccgtatc 405  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  45633655 ccaaccatgtagccgccttcactccaaacgacaccacactcgcgccgtatc 45633605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 11136583 - 11136736
Alignment:
Q  1 aggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaaagtgcttggaaacta 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11136583 aggtcaatatttgataatggaacttacaacaggataaaacaattacgccatcaaacacgacttcaaaaaatatgtccatgagaaaagtgcttggaaacta 11136682  T
Q  101 tatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11136683 tatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa 11136736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 7314064 - 7314217
Alignment:
Q  1 aggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaaagtgcttggaaacta 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7314064 aggtcaatatttgataatggaacttacaacaggataaaacaattatgccatcaaatacgacttcaaaaaatatgtccatgagaaaagtgcttggaaacta 7314163  T
Q  101 tatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7314164 tatcaaaaactaccattaccttttgttatatatcaccagaagtcttatttttaa 7314217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 19185153 - 19185220
Alignment:
Q  268 atcaaaccttacacaccctttctctctcactttcatttatcagtttaatttcttctccgctctctatctc 337  Q
    ||||||||||||||||||  ||| |||||||| ||||| ||||||| |||||||| || |||||| ||||    
T  19185153 atcaaaccttacacaccc--tctttctcacttccatttctcagttttatttcttcgcctctctctgtctc 19185220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 246023 - 245939
Alignment:
Q  1 aggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaa 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  246023 aggtcaatatttgataatggaacttacaacaggacaaaacaattctgccatcaaatacgactttaaaaaatatgtccatgagaaa 245939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37282175 - 37282259
Alignment:
Q  1 aggtcaatatttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaa 85  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  37282175 aggtcaatatttgataatggaacttacaacgggacaaaacaattctgccatcaaatacgactttaaaaaatatgtccatgagaaa 37282259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 40934032 - 40933961
Alignment:
Q  15 taatggaacttacaacaggacaaaacaattcagccatcaaatacgac-ttcaaaaaatatgtccatgagaaa 85  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  40934032 taatggaatttacaaaaggacaaaacaattcagctatcaaatacgactttaaaaaaatatgtccatgagaaa 40933961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 11233029 - 11232957
Alignment:
Q  15 taatggaacttacaacaggacaaaacaattcagccatcaaatacgac--ttcaaaaaatatgtccatgagaaa 85  Q
    |||||||| |||||| |||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||||    
T  11233029 taatggaatttacaaaaggacaaaacaattcagctatcaaatacgacttttcaaaaaatacgtccatgagaaa 11232957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 23348440 - 23348366
Alignment:
Q  10 tttgataatggaacttacaacaggacaaaacaattcagccatcaaatacgacttcaaaaaatatgtccatgagaaa 85  Q
    ||||||||||||||||||||||  |||||||||||     |||||||||||||| ||||||| |||||||||||||    
T  23348440 tttgataatggaacttacaacaaaacaaaacaatttttatatcaaatacgactt-aaaaaatctgtccatgagaaa 23348366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7279 - 7245
Alignment:
Q  1 aggtcaatatttgataatggaacttacaacaggac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  7279 aggtcaatatttgataatggaacttacaacaggac 7245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 29384816 - 29384906
Alignment:
Q  226 ggtggaaattaaattatttttcatttaaaaaa-catattacaaatcaaaccttacacaccctttctctctcactttcatttatcagtttaattt 318  Q
    ||||||||||||||||||||| |||||||||| || | || | ||||||||||||||||||  |||||||||||| ||||| ||| ||| ||||    
T  29384816 ggtggaaattaaattattttttatttaaaaaaacaaaata-agatcaaaccttacacaccc--tctctctcacttccatttctcaatttcattt 29384906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0894 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0894
Description:

Target: scaffold0894; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34 - 1
Alignment:
Q  1 aggtcaatatttgataatggaacttacaacagga 34  Q
    ||||||||||||||||||||||||||||||||||    
T  34 aggtcaatatttgataatggaacttacaacagga 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University