View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_15 (Length: 428)

Name: NF19519_low_15
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_15
NF19519_low_15
[»] chr2 (2 HSPs)
chr2 (13-329)||(4896915-4897232)
chr2 (13-329)||(4944309-4944626)
[»] chr8 (1 HSPs)
chr8 (29-66)||(14277832-14277869)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 4897232 - 4896915
Alignment:
Q  13 aaaattaaattggccacacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4897232 aaaattaaattggccccacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg 4897133  T
Q  113 gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctct-tgacatcggttgccacacgtgtacaaaaatttgc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  4897132 gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctctctgacatcggttgccacacgtgtactaaaatttgc 4897033  T
Q  212 aatgccactattgataattatgctcttaatctcgtcttctccggaagttttcatacaaattctgagtatactacgtatacatttgtgatgattttattca 311  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  4897032 aatgccactattgataattatgctcttaatctcgtcttctctggaagttttcatactaattctgagtatactacgtatacatttgtgatgcttttattca 4896933  T
Q  312 gaagctaattaagaacta 329  Q
    ||||||||||||||||||    
T  4896932 gaagctaattaagaacta 4896915  T

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Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 4944626 - 4944309
Alignment:
Q  13 aaaattaaattggccacacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4944626 aaaattaaattggccccacttatctcacaatatactccaaaaccatattttatacattattgttttacttgaaataggctttgaaatgataaaagacacg 4944527  T
Q  113 gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctct-tgacatcggttgccacacgtgtacaaaaatttgc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  4944526 gtagctaaagttggaaaccgtggtcaccaaaagccaccaactattaagcaaatatccatccctctctgacatcggttgccacacgtgtactaaaatttgc 4944427  T
Q  212 aatgccactattgataattatgctcttaatctcgtcttctccggaagttttcatacaaattctgagtatactacgtatacatttgtgatgattttattca 311  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  4944426 aatgccactattgataattatgctcttaatctcgtcttctctggaagttttcatactaattctgagtatactacgtatacatttgtgatgcttttattca 4944327  T
Q  312 gaagctaattaagaacta 329  Q
    ||||||||||||||||||    
T  4944326 gaagctaattaagaacta 4944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 14277832 - 14277869
Alignment:
Q  29 cacttatctcacaatatactccaaaaccatattttata 66  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  14277832 cacttatctcacaatatactccaaaactatattttata 14277869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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