View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_18 (Length: 421)
Name: NF19519_low_18
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 125 - 411
Target Start/End: Complemental strand, 11077594 - 11077307
Alignment:
| Q |
125 |
ggttaatcaaagagagggtagtttaaaaagaaaactagaattatattctaatattttttggg-aaataaactctgaatatatcataaagaaaggagatta |
223 |
Q |
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| T |
11077594 |
ggttaatcaaagagaggccagtttaaaaagaccactagaattatcttctaacattttttaggcaaataagctctgaatatgtctttaaaaaaggagatta |
11077495 |
T |
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| Q |
224 |
tgtagtttcctaggagactcaaaaattctcgcatcataggaactttaagtaaaactaaaataaccaatcaacatacctatttctctcgcatcaggtgtgc |
323 |
Q |
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| T |
11077494 |
tgtagtttcctaggagactccgaaattcttgcatcacaggaacttcgagtaaaactaaaataaccaatcaacacacctatttatctcgcaccaggtgtgc |
11077395 |
T |
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| Q |
324 |
ttaaaagtaacattgccttgtaagatagtgagattttggatgcaatgaattaagataaggatgtttatgttatgcttacaactctctg |
411 |
Q |
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| T |
11077394 |
ttaaaaataacattgccttgtcagatagtgagatttaggatgcattgaaccaagatagggatgtttctgttatgcttacaactctctg |
11077307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 11077860 - 11077790
Alignment:
| Q |
19 |
gtaggtttagctagttttctgattgagagttaataatgcatgacaataagtctgcatgaaagagtcacatg |
89 |
Q |
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| T |
11077860 |
gtaggtttggctggttttctgattgagagttaataatgcatgacaataagtctgcatgaaagagtcacatg |
11077790 |
T |
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