View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_20 (Length: 406)

Name: NF19519_low_20
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_20
NF19519_low_20
[»] chr5 (13 HSPs)
chr5 (119-406)||(41332139-41332426)
chr5 (119-406)||(41328126-41328413)
chr5 (63-406)||(41366319-41366659)
chr5 (284-406)||(41322210-41322332)
chr5 (63-301)||(41316264-41316502)
chr5 (63-231)||(41337243-41337411)
chr5 (63-301)||(41324333-41324571)
chr5 (117-297)||(31225190-31225370)
chr5 (108-267)||(31188434-31188593)
chr5 (57-214)||(41286360-41286517)
chr5 (192-307)||(41369748-41369864)
chr5 (117-307)||(31178398-31178588)
chr5 (188-232)||(41431266-41431310)
[»] chr4 (1 HSPs)
chr4 (57-153)||(17249071-17249167)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 119 - 406
Target Start/End: Complemental strand, 41332426 - 41332139
Alignment:
Q  119 attttccttttgaatcttgagaagaacatctactaagtcattatccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaatatc 218  Q
    |||||||| ||||||||||||||||||||||||||  || | ||| ||||| | |||||||| | | | | | ||||| |||||||||||||||| ||||    
T  41332426 attttcctgttgaatcttgagaagaacatctactagatcttcatcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatc 41332327  T
Q  219 atatcagtctctctctgaagttttgcaagtttgttctttggcctactcaacatttgaggcacttgaatagaaggatacaaatctgcaatttcaaatcctc 318  Q
    ||||||  |||||| |||| |||| | | |||| ||||   ||||||||    |||| ||| || |||||||||||||||||||||||||||||||||||    
T  41332326 atatcaagctctctatgaattttttccattttggtcttctccctactcatgcattgaagcattttaatagaaggatacaaatctgcaatttcaaatcctc 41332227  T
Q  319 ctaatagtaccaatactttctccaatgctgatatgaacacatcttggtgtctattccttttcccaaaagccgcccgtgctgtaatccc 406  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  41332226 ctaatagcaccaatactttctccattgctgatatgaacacatcttggtttctattccttttcccaaaagctgcccgcgctgttatccc 41332139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 119 - 406
Target Start/End: Complemental strand, 41328413 - 41328126
Alignment:
Q  119 attttccttttgaatcttgagaagaacatctactaagtcattatccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaatatc 218  Q
    |||||||| ||||||||||||||||||||||||||  || | ||| ||||| | |||||||| | ||| | | ||||| ||||||||||||||   ||||    
T  41328413 attttcctgttgaatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatc 41328314  T
Q  219 atatcagtctctctctgaagttttgcaagtttgttctttggcctactcaacatttgaggcacttgaatagaaggatacaaatctgcaatttcaaatcctc 318  Q
    |||||| ||||| | ||||||||| | | |||| ||||   |||| ||| |  |||| ||| || |||||||||||||||||||||||||||||||| ||    
T  41328313 atatcaatctctgtatgaagtttttccattttggtcttctccctagtcatccattgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttc 41328214  T
Q  319 ctaatagtaccaatactttctccaatgctgatatgaacacatcttggtgtctattccttttcccaaaagccgcccgtgctgtaatccc 406  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  41328213 ctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtctattccttttcccaaaagctgcccgcgctgttatccc 41328126  T

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Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 63 - 406
Target Start/End: Complemental strand, 41366659 - 41366319
Alignment:
Q  63 ctaacctggatgacagattttatactgtcattagtcaaggggtattgtgggtgttcattttccttttgaatcttgagaagaacatctactaagtcattat 162  Q
    |||||||||||||| ||||||||| |||| |  |||||||| | ||||| |||   |||| |   ||||||||||||||||||||||||||  |||| ||    
T  41366659 ctaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatctactagatcatcat 41366563  T
Q  163 ccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaatatcatatcagtctctctctgaagttttgcaagtttgttctttggcct 262  Q
     ||| || | || ||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||     
T  41366562 tcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggcca 41366463  T
Q  263 actcaacatttgaggcacttgaatagaaggatacaaatctgcaatttcaaatcctcctaatagtaccaatactttctccaatgctgatatgaacacatct 362  Q
    ||| ||||||||| | | || |||||||||||||||||||||||    ||||||||| |||||    |||| || || || ||||||| | ||||| |||    
T  41366462 acttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttct 41366363  T
Q  363 tggtgtctattccttttcccaaaagccgcccgtgctgtaatccc 406  Q
    |||||| ||||| |||| ||||| || ||||| ||||| |||||    
T  41366362 tggtgtttattcttttttccaaatgctgcccgcgctgtcatccc 41366319  T

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Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 284 - 406
Target Start/End: Complemental strand, 41322332 - 41322210
Alignment:
Q  284 aatagaaggatacaaatctgcaatttcaaatcctcctaatagtaccaatactttctccaatgctgatatgaacacatcttggtgtctattccttttccca 383  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41322332 aatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtctattccttttccca 41322233  T
Q  384 aaagccgcccgtgctgtaatccc 406  Q
    ||| ||||||  ||||| |||||    
T  41322232 aaaaccgccctcgctgttatccc 41322210  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 63 - 301
Target Start/End: Complemental strand, 41316502 - 41316264
Alignment:
Q  63 ctaacctggatgacagattttatactgtcattagtcaaggggtattgtgggtgttcattttccttttgaatcttgagaagaacatctactaagtcattat 162  Q
    |||||||||||||  ||||||||| |||||| ||| || || | ||||| ||| | |||||||| ||||||||||||||||||||||||||  || | ||    
T  41316502 ctaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttcat 41316403  T
Q  163 ccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaatatcatatcagtctctctctgaagttttgcaagtttgttctttggcct 262  Q
    | |||||   |||||||| | | | ||| ||||| |||||||||||||||||| ||||||||  |||| | ||||||||| | | |||| |||| |  ||    
T  41316402 cattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctctttgtgaagtttttccattttggtcttcgctct 41316303  T
Q  263 actcaacatttgaggcacttgaatagaaggatacaaatc 301  Q
    ||||||   |||| ||| || |||||||||| |||||||    
T  41316302 actcaagcattgaagcaatttaatagaaggaaacaaatc 41316264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 41337411 - 41337243
Alignment:
Q  63 ctaacctggatgacagattttatactgtcattagtcaaggggtattgtgggtgttcattttccttttgaatcttgagaagaacatctactaagtcattat 162  Q
    |||||||| ||||| ||||||||| | |||| ||||||||| | ||||| |||  ||||||| | ||||| ||||||||||||||| |||| ||| | ||    
T  41337411 ctaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcat 41337312  T
Q  163 ccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaatatcatatcagtctctc 231  Q
    ||||||| ||||   ||| | |   | ||||||||| ||||||||||||||||||| ||||| ||||||    
T  41337311 ccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctc 41337243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 301
Target Start/End: Complemental strand, 41324571 - 41324333
Alignment:
Q  63 ctaacctggatgacagattttatactgtcattagtcaaggggtattgtgggtgttcattttccttttgaatcttgagaagaacatctactaagtcattat 162  Q
    |||||||||||||  || |||||| ||||||  || || || | ||||| ||| | |||||||| ||||||||||||||||||||||||||  |  |  |    
T  41324571 ctaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattctt 41324472  T
Q  163 ccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaatatcatatcagtctctctctgaagttttgcaagtttgttctttggcct 262  Q
    | |||||   |||||||| | | | ||| ||||| ||||| ||||||||||||||||||||| ||||| | ||||||||| | | ||||  ||| | |||    
T  41324471 cattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagtttttccattttggccttcgccct 41324372  T
Q  263 actcaacatttgaggcacttgaatagaaggatacaaatc 301  Q
    |||||    |||| ||| || ||||||||||||||||||    
T  41324371 actcacgcattgaagcaatttaatagaaggatacaaatc 41324333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 297
Target Start/End: Complemental strand, 31225370 - 31225190
Alignment:
Q  117 tcattttccttttgaatcttgagaagaacatctactaagtcattatccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaata 216  Q
    |||||||||| ||| ||||||||||||  ||| ||||  || | |||||||||   |||||||| | |   |||||||||||||||||| ||||||||||    
T  31225370 tcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatcttgcaata 31225271  T
Q  217 tcatatcagtctctctctgaagttttgcaagtttgttctttggcctactcaacatttgaggcacttgaatagaaggataca 297  Q
    |||||||| ||||| | ||||| ||| ||| |||| |||| | |||||||| |  |||| ||| ||  |||||||||||||    
T  31225270 tcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggataca 31225190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 31188434 - 31188593
Alignment:
Q  108 tgtgggtgttcattttccttttgaatcttgagaagaacatctactaagtcattatccttgctcgtttccttgttactacgtttatgatcatcgatgatgt 207  Q
    |||| ||| |||||||||| ||||||||||||||||  ||| ||||  || | |||||||||   |||||||| | |   |||||||||| ||||||| |    
T  31188434 tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat 31188533  T
Q  208 cttgcaatatcatatcagtctctctctgaagttttgcaagtttgttctttggcctactca 267  Q
    ||||||||||||||||| ||||| | ||||| ||| ||| |||  |||| | ||||||||    
T  31188534 cttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactca 31188593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 41286517 - 41286360
Alignment:
Q  57 tgtagtctaacctggatgacagattttatactgtcattagtcaaggggtattgtgggtgttcattttccttttgaatcttgagaagaacatctactaagt 156  Q
    ||||| |||||||||||||| | ||||| | | |||| ||||||||| | || || ||| ||| |||||| ||||||||||||||||||||| | ||  |    
T  41286517 tgtagactaacctggatgactgcttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagat 41286418  T
Q  157 cattatccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaa 214  Q
    | | ||| |||||   |||| ||| ||| | |||||||||||| ||||||||| ||||    
T  41286417 cttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtctggcaa 41286360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 41369864 - 41369748
Alignment:
Q  192 tgatcatcgatgatgtcttgcaatatcatatca-gtctctctctgaagttttgcaagtttgttctttggcctactcaacatttgaggcacttgaatagaa 290  Q
    ||||||| |||||| ||||||||||| |||||| | || ||||||||||||| | | |||| |||||| |||||| | | ||||| | | || |||||||    
T  41369864 tgatcattgatgatatcttgcaatataatatcatgcctttctctgaagtttttccattttggtctttgccctacttaccctttgaagtattttaatagaa 41369765  T
Q  291 ggatacaaatctgcaat 307  Q
    ||||||||||| |||||    
T  41369764 ggatacaaatcagcaat 41369748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 31178398 - 31178588
Alignment:
Q  117 tcattttccttttgaatcttgagaagaacatctactaagtcattatccttgctcgtttccttgttactacgtttatgatcatcgatgatgtcttgcaata 216  Q
    |||||||||| ||||||||||| |||  |||| ||||  || | |||||||||   |||||||| | |   |||||||||||||| ||| ||||||||||    
T  31178398 tcattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaata 31178497  T
Q  217 tcatatcagtctctctctgaagttttgcaagtttgttctttggcctactcaacatttgaggcacttgaatagaaggatacaaatctgcaat 307  Q
    |||||||| ||||| | ||||  ||| ||| |||| ||||   || ||||| |  |||| ||| || |||||||||||||| ||| |||||    
T  31178498 tcatatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaat 31178588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 41431310 - 41431266
Alignment:
Q  188 tttatgatcatcgatgatgtcttgcaatatcatatcagtctctct 232  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||||    
T  41431310 tttatgatcattgatgatgtcttgcaatatcgtatcagtttctct 41431266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 17249071 - 17249167
Alignment:
Q  57 tgtagtctaacctggatgacagattttatactgtcattagtcaaggggtattgtgggtgttcattttccttttgaatcttgagaagaacatctacta 153  Q
    ||||| |||||||||||||  ||||||||| |||||| |||||| |  | ||||||||  ||| |||| | ||||||||||| |||| |||| ||||    
T  17249071 tgtagactaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaacta 17249167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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