View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_21 (Length: 389)
Name: NF19519_low_21
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 5173556 - 5173922
Alignment:
| Q |
14 |
atcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagatttctaatgataaaaatagatttgatgtctcaattgtgtcactaaattt- |
112 |
Q |
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| T |
5173556 |
atcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagatttctaatgataaaaatagatttgatgtctcaattgtgtcactaaatttt |
5173655 |
T |
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| Q |
113 |
ggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttgaaagcagcatttttagctataggataatgacaagtaacaacatgtca |
212 |
Q |
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| T |
5173656 |
ggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttgaaagcagcatttttagctataggataatgacaagtaacaacatgtca |
5173755 |
T |
|
| Q |
213 |
aaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgcaactatatagactaatccctcgagttaaatagagtcacgagggtgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173756 |
aaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgcaactatatagactaatccctcgagttaaatagagtcacgagggtgat |
5173855 |
T |
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| Q |
313 |
acaactctccattaagagttttaacgctgctgcattctcagagctggattgaaacctaggacctatg |
379 |
Q |
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| T |
5173856 |
acaactctccattaagagttttaacgctgctgcattctcagagctggattgaaacctaggacctatg |
5173922 |
T |
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