View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_22 (Length: 342)

Name: NF19519_low_22
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_22
NF19519_low_22
[»] chr3 (9 HSPs)
chr3 (7-298)||(24648462-24648750)
chr3 (3-298)||(24733305-24733600)
chr3 (3-249)||(24693110-24693356)
chr3 (3-206)||(24641784-24641987)
chr3 (108-321)||(18157715-18157928)
chr3 (41-235)||(24720667-24720864)
chr3 (3-163)||(24656363-24656523)
chr3 (259-321)||(24720602-24720664)
chr3 (7-161)||(24634261-24634415)
[»] chr5 (1 HSPs)
chr5 (108-321)||(15282103-15282316)
[»] chr2 (1 HSPs)
chr2 (108-321)||(24223601-24223814)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 24648750 - 24648462
Alignment:
Q  7 ctgtttttgacatctctattttgtcacgcagttgcatccacagctgatatgagcttcccaactactatatatatctttcacatttctggtgttgttgggg 106  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||||    
T  24648750 ctgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaactactatatatatctttcatatctccggtgttgttgggg 24648651  T
Q  107 tcgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagctgcat 206  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||| |||| ||| |||| ||| | | ||||||    
T  24648650 tcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcattcgttttagtggttactttattctgtcactctaactgcat 24648551  T
Q  207 tgaattggcgtatcaattctcatgtcgtacactagacctcttccgtcctaaacattcaaatgctgctactattgctcctctgcctccaaatt 298  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||   |||||||||||| |||||||||||    
T  24648550 tgaattggcgtatcaactctcatgtcgtacactagacttcttccttcctaaacattcaaatgctg---ctattgctcctcagcctccaaatt 24648462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 24733305 - 24733600
Alignment:
Q  3 gttgctgtttttgacatctctattttgtcacgcagttgcatccacagctgatatgagcttcccaactactatatatatctttcacatttctggtgttgtt 102  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  24733305 gttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgtt 24733404  T
Q  103 ggggtcgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagct 202  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||| |||| ||| |||||||||||| ||    
T  24733405 ggggtcgacacacttttgtggattatcctctctcagttttcgaattggtgtatcatcaactcattcgttttagtggttactttagtctgccacaccaact 24733504  T
Q  203 gcattgaattggcgtatcaattctcatgtcgtacactagacctcttccgtcctaaa-----cattcaaatgctgctactattgctcctctgcctccaaat 297  Q
    |||| ||||||| |||     ||| | ||| ||||||||||||||||| |||||||     |||||||||||| ||||||||||||||  ||||||||||    
T  24733505 gcatcgaattggtgta-----tctaacgtcctacactagacctcttccttcctaaacattccattcaaatgctcctactattgctccttcgcctccaaat 24733599  T

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Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 24693356 - 24693110
Alignment:
Q  3 gttgctgtttttgacatctctattttgtcacgcagttgcatccacagctgatatgagcttcccaactactatatatatctttcacatttctggtgttgtt 102  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  24693356 gttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgccagctactatatatatctttcacttttctggtgttgtt 24693257  T
Q  103 ggggtcgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagct 202  Q
    ||    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  || ||||| |||| ||  |||| ||||||| ||    
T  24693256 ggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcattttagtggttacttttgtctgtcacaccaact 24693157  T
Q  203 gcattgaattggcgtatcaattctcatgtcgtacactagacctcttc 249  Q
    ||||  | ||||   || || | ||||| ||||||||||||||||||    
T  24693156 gcatcaagttggttcataaactttcatgccgtacactagacctcttc 24693110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 24641987 - 24641784
Alignment:
Q  3 gttgctgtttttgacatctctattttgtcacgcagttgcatccacagctgatatgagcttcccaactactatatatatctttcacatttctggtgttgtt 102  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  || |||||||||||||||||||| ||||||||||||||    
T  24641987 gttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactatatatatctttcacttttctggtgttgtt 24641888  T
Q  103 ggggtcgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagct 202  Q
    ||    ||||||||||||||||| ||||| |||||| ||||||||||||||||  ||||||||||  || ||||| |||| ||  |||| ||||||| ||    
T  24641887 ggatgtgagacacttttgtggataatcctttctcagatctcgaattggtgtatcgtcaactcattcattttagtggttacttttctctgtcacaccaact 24641788  T
Q  203 gcat 206  Q
    ||||    
T  24641787 gcat 24641784  T

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Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 321
Target Start/End: Original strand, 18157715 - 18157928
Alignment:
Q  108 cgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagctgcatt 207  Q
    |||||| ||||||| ||| ||| |||| | | ||||| |||||||||||||||| ||||| ||| ||||  |||| ||| ||| |||||||| |||||||    
T  18157715 cgagacgcttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcatt 18157814  T
Q  208 gaattggcgtatcaattctcatgtcgtacactagacctcttccgtcctaaacattcaaatgctgctactattgctcctctgcctccaaattccgaaccac 307  Q
    ||||| | || | ||  |||| |||||| |||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||  |||||||    
T  18157815 gaattagtgtgtgaacactcacgtcgtagactagacctcttccgttctacacgttcaaatgctgctgctattgctcctctgcctccaaatttggaaccac 18157914  T
Q  308 gggaagcagctcag 321  Q
     |  ||||||||||    
T  18157915 agccagcagctcag 18157928  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 24720864 - 24720667
Alignment:
Q  41 catccacagctgatatgagcttcccaactactatatatatctttcacatttctggtgttgttggggtcgagacacttttgtggattatcctctctcagtt 140  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    ||||| ||| ||||||| ||||| |||||| |    
T  24720864 catccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgttggatgtgagacgcttctgtggataatcctttctcagat 24720765  T
Q  141 ct---cgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagctgcattgaattggcgtatcaattctcatgtcgta 235  Q
    ||    |||||||| ||| || |||| ||| |||  |||  |||| ||| |||||||||||| |||||| |||||||  |||||| | ||| ||||||    
T  24720764 ctggaggaattggtttatcattaacttattcgtttcagtcgttactttagtctgccacaccaactgcatcgaattggtttatcaactgtcacgtcgta 24720667  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 24656523 - 24656363
Alignment:
Q  3 gttgctgtttttgacatctctattttgtcacgcagttgcatccacagctgatatgagcttcccaactactatatatatctttcacatttctggtgttgtt 102  Q
    |||||||||||||||  ||  ||||||||| ||||||||| |||  ||||| |||||||||| ||||||||| |  || |||||| ||||||||||| ||    
T  24656523 gttgctgtttttgactgctagattttgtcatgcagttgcaaccatggctgacatgagcttcctaactactatgttcatatttcacttttctggtgttatt 24656424  T
Q  103 ggggtcgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaact 163  Q
    ||    ||||||||| | |||||| | ||| || | |||| |||||||| ||| |||||||    
T  24656423 ggatgtgagacacttctttggattctgctccctgatttctggaattggtatatcatcaact 24656363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 24720664 - 24720602
Alignment:
Q  259 cattcaaatgctgctactattgctcctctgcctccaaattccgaaccacgggaagcagctcag 321  Q
    ||||||||| ||||||||||||||||||||||||| ||||  ||||||| | |||||||||||    
T  24720664 cattcaaattctgctactattgctcctctgcctccgaatttggaaccaccgcaagcagctcag 24720602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 24634415 - 24634261
Alignment:
Q  7 ctgtttttgacatctctattttgtcacgcagttgcatccacagctgatatgagcttcccaactactatatatatctttcacatttctggtgttgttgggg 106  Q
    |||||||| || ||| |||||||||| ||||||||| |||  ||||| |||||||| |||||||||||    || || ||| ||||||||||| ||||      
T  24634415 ctgttttttacttctgtattttgtcatgcagttgcaaccatggctgacatgagcttaccaactactatgatcatattccacttttctggtgttattggat 24634316  T
Q  107 tcgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaa 161  Q
      ||||||||| | |||||| | ||| || |||||| |||||||| ||| |||||    
T  24634315 gtgagacacttctttggattctactccctaagttctggaattggtatatcatcaa 24634261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 321
Target Start/End: Original strand, 15282103 - 15282316
Alignment:
Q  108 cgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagctgcatt 207  Q
    |||||| ||||||| ||| ||| |||| | | ||||| |||||||||||||||| ||||| ||| ||||  |||| ||| ||| |||||||| |||||||    
T  15282103 cgagacgcttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcatt 15282202  T
Q  208 gaattggcgtatcaattctcatgtcgtacactagacctcttccgtcctaaacattcaaatgctgctactattgctcctctgcctccaaattccgaaccac 307  Q
    ||||| | || | ||  |||| |||||| |||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||  |||||||    
T  15282203 gaattagtgtgtgaacactcacgtcgtagactagacctcttccgttctacacgttcaaatgctgctgctattgctcctctgcctccaaatttggaaccac 15282302  T
Q  308 gggaagcagctcag 321  Q
     |  ||||||||||    
T  15282303 agccagcagctcag 15282316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 321
Target Start/End: Original strand, 24223601 - 24223814
Alignment:
Q  108 cgagacacttttgtggattatcctctctcagttctcgaattggtgtattatcaactcatttgttgtagtgattacgttaatctgccacaccagctgcatt 207  Q
    |||||| ||||||| ||| ||| |||| | | ||||| |||||||||||||||| ||||| ||| ||||  |||| ||| ||| |||||||| |||||||    
T  24223601 cgagacgcttttgttgataatcgtctcccggatctcgtattggtgtattatcaagtcattcgttttagtagttactttagtcttccacaccaactgcatt 24223700  T
Q  208 gaattggcgtatcaattctcatgtcgtacactagacctcttccgtcctaaacattcaaatgctgctactattgctcctctgcctccaaattccgaaccac 307  Q
    ||||| | || | ||  |||| |||||| |||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||  |||||||    
T  24223701 gaattagtgtgtgaacactcacgtcgtagactagacctcttccgttctacacgttcaaatgctgctgctattgctcctctgcctccaaatttggaaccac 24223800  T
Q  308 gggaagcagctcag 321  Q
     |  ||||||||||    
T  24223801 agccagcagctcag 24223814  T

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