View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_23 (Length: 337)
Name: NF19519_low_23
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 28372211 - 28372517
Alignment:
| Q |
19 |
cacagatcgtcgaagtttacgtccgtgtcaccggaggcgaagtcggcgccgccagttccctcgctcccaagatcggaccactcggtctctctccaaaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372211 |
cacagatcgtcgaagtttacgtccgtgtcaccggaggcgaagtcggcgccgccagttccctcgctcccaagatcggaccactcggtctctctccaaaaaa |
28372310 |
T |
|
| Q |
119 |
gataggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtgtcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggtt |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372311 |
gatcggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtgtcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggtt |
28372410 |
T |
|
| Q |
219 |
gttccctccgcggcggcgctggtgattaaggcattgaaggaaccagagagagataggaagaagactaagaatattaagcataatgggaatatttcgcttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372411 |
gttccctccgcggcggcgctggtgattaaggcattgaaggaaccagagagagataggaagaagactaagaatattaagcataatgggaatatttcgcttg |
28372510 |
T |
|
| Q |
319 |
atgatgt |
325 |
Q |
| |
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||||||| |
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| T |
28372511 |
atgatgt |
28372517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 21783159 - 21783460
Alignment:
| Q |
24 |
atcgtcgaagtttacgtccgtgtcaccggaggcgaagtcggcgccgccagttccctcgctcccaagatcggaccactcggtctctctccaaaaaagatag |
123 |
Q |
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|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| | |
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| T |
21783159 |
atcgtcgaagtttacgtccgcgtcaccggcggtgaagtcggagccgccagttccctcgctcccaagatcggtcctctcggtctctcaccaaagaagatcg |
21783258 |
T |
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| Q |
124 |
gagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtgtcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggttgttcc |
223 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| | || ||||||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
21783259 |
gagaagacatcgccaaagaaaccgcaaaggattggaagggtctgagggtgacagtcaagctcaccgttcagaatcgtcaggctaaggtcgctgttgttcc |
21783358 |
T |
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| Q |
224 |
ctccgcggcggcgctggtgattaaggcattgaaggaaccagagagagataggaagaagactaagaatattaagcataatgggaatatttcgcttgatgat |
323 |
Q |
| |
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|| ||||| |||||||| || ||||| |||||||||||||| || ||| | |||||||||||||| || ||||||||||||||||| || ||||||||| |
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| T |
21783359 |
gtctgcggctgcgctggttatcaaggctttgaaggaaccagaaagggatcgcaagaagactaagaacatcaagcataatgggaatatctctcttgatgat |
21783458 |
T |
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| Q |
324 |
gt |
325 |
Q |
| |
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|| |
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| T |
21783459 |
gt |
21783460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 40220254 - 40220103
Alignment:
| Q |
72 |
agttccctcgctcccaagatcggaccactcggtctctctccaaaaaagataggagaagacatcgccaaagaaaccgcaaaagactggaagggtctccgtg |
171 |
Q |
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||||| || ||||| || ||||| |||||||||||||| ||||||||||||||||||||||| || || | || || ||||||||||||||| || | | |
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| T |
40220254 |
agttcacttgctccgaaaatcggtccactcggtctctccccaaaaaagataggagaagacattgctaaggtgactgccaaagactggaagggtatcaggg |
40220155 |
T |
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| Q |
172 |
tcacagtcaagctcaccgtccagaatcgtcaagcgaaggttgcggttgttcc |
223 |
Q |
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| |||| |||||||| ||| || |||||||| ||| || ||| ||| ||||| |
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| T |
40220154 |
tgacagccaagctcatcgtgcaaaatcgtcaggcggagattgaggtggttcc |
40220103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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