View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_24 (Length: 326)

Name: NF19519_low_24
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_24
NF19519_low_24
[»] chr1 (1 HSPs)
chr1 (9-304)||(36582173-36582468)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 36582468 - 36582173
Alignment:
Q  9 ataattctttataactagtatatgtagnnnnnnnnnnnnttcagattgtctacaattgttaatacccacatttatgcagtcggcacatcaagggttgttg 108  Q
    |||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36582468 ataattctttataactagtatatgtagaaaaaacaaaaattcagattgtctacaattgttaatacccacatttatgcagtcagcacatcaagggttgttg 36582369  T
Q  109 attctagatcaaatatttcaaatttcaatacagtcggaattttaaatttgaaccgtctaatgtgcagattgtgtgaatgcgggtgattgatgaccgcata 208  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36582368 attctagatcaaatatttcaaatttcaatacgatcggaattttaaatttgaaccgtctaatgtgcagattgtgtgaatgcgggtgattgatgaccgcata 36582269  T
Q  209 caatccaaattcaaaagcactcactgacctgcatattattgagagttgtgaaatattttcatctacattttctcaatcttatttaccgttgtctcg 304  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36582268 caatccaaattcaaaaacactcactgacctgcatattgttgagagttgtgaaatattttcatctaccttttctcaatcttatttaccgttgtctcg 36582173  T

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