View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_26 (Length: 302)
Name: NF19519_low_26
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 37851426 - 37851702
Alignment:
| Q |
15 |
tatcatttgagaggttccatttaagccattcatgggtacctaaactgaagaatatataccgaatcccttctttgatgaaaccctcccaaaaagttttaat |
114 |
Q |
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| T |
37851426 |
tatcatttgagaggttccatttaagccattcatgggtacctaaactgaagaatatataccgaatcccttctttgatgaaaccctcccaaaaagttttaat |
37851525 |
T |
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| Q |
115 |
atcgttataatctatgaaaacatgcataagagtttcaggggtattagtataaatagagttatgagacttacccgattgacatctttctaaatttgtgaga |
214 |
Q |
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| T |
37851526 |
atcgttataatctatgaaaacatgcataagagtttcaggcgtattagtataaatagagttatgagacttacccgattgacatctttctaaatttgtgaga |
37851625 |
T |
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| Q |
215 |
agagtgtcatgacttgctttctagatatgagcatgcgtagttgcaacatcaccttcaattattaatctttgatataa |
291 |
Q |
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| T |
37851626 |
agagtgtcatgacttgctttctagatatgagcacgcgtagttgcaacatgatcttcaactattaatctttgacataa |
37851702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 37851982 - 37852048
Alignment:
| Q |
236 |
tagatatgagcatgcgtagttgcaacatcaccttcaattattaatctttgatataatcgggttcggt |
302 |
Q |
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| T |
37851982 |
tagatatgagcatgcatagttgcaacatgaccttcaactattaacctttgatataatcgggttcggt |
37852048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 37851816 - 37851876
Alignment:
| Q |
237 |
agatatgagcatgcgtagttgcaacatcaccttcaattattaatctttgatataatcgggt |
297 |
Q |
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| T |
37851816 |
agatatgagcatacataattgcaacatgaccttcaactattaacctttgatataatcgggt |
37851876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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