View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_27 (Length: 294)
Name: NF19519_low_27
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 88 - 280
Target Start/End: Original strand, 7431032 - 7431224
Alignment:
| Q |
88 |
aacatcacacagcaaacaacttggcatgattgatagccaataatccacacaaactcaaatatccttaaacaatctttttatttcctttctcacgacctct |
187 |
Q |
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| T |
7431032 |
aacatcacacagcaaccaacttggcatgattgatagccaataatccacacaaactcaaatatccttaaacaatctttttatttcctttctcacgacctct |
7431131 |
T |
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| Q |
188 |
cttcattttctggctgcctcctttaaattttataggctttccaatagttatgtagatagagatgaaaataacaacaattttcatatttcataa |
280 |
Q |
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| T |
7431132 |
cttcattttctggctgcctcctttaaattttataggctttccaatagttatgtagatagagatgaaaataacaacaattttcatatttcataa |
7431224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 7430987 - 7431041
Alignment:
| Q |
8 |
aagaagagggggaaggaaatagaaaacaaaaacctcaagctagcaaacatcacac |
62 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7430987 |
aagaagagggtgaaggaaatagaaaacaaaaacctcaagctagcaaacatcacac |
7431041 |
T |
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