View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19519_low_29 (Length: 287)
Name: NF19519_low_29
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_29 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 49208780 - 49209055
Alignment:
| Q |
1 |
attaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49208780 |
attaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggca |
49208879 |
T |
|
| Q |
101 |
gggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49208880 |
gggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaa |
49208979 |
T |
|
| Q |
201 |
tccatgctttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49208980 |
tccatgctttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
49209055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 49213620 - 49213895
Alignment:
| Q |
1 |
attaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggca |
100 |
Q |
| |
|
|||||| ||||||||| || ||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||| ||| |
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|
| T |
49213620 |
attaacatgattggagtgtctatcatggggtgaaataagtttggcgtatttgaggaggctttcctgatcgtcaacacgaggaccgatagtgaagacagca |
49213719 |
T |
|
| Q |
101 |
gggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaa |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||| || |||| |
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|
| T |
49213720 |
gggagaacgaaagggagtttttcggcactcatggcttgaacttcgaaggtatagttcaccggtgaaaggtcgaagaccgtgcatgattgaccggggaaaa |
49213819 |
T |
|
| Q |
201 |
tccatgctttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
276 |
Q |
| |
|
||||||||||||||| || |||| ||||| |||||||| |||||||| |||| ||||||||||| |||||||| |
|
|
| T |
49213820 |
tccatgctttcttttggagttttatgtcgtcgattccggcaccagttatagcaagatattctgatgcttttgctac |
49213895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 49188767 - 49188981
Alignment:
| Q |
1 |
attaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggca |
100 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||| |||||||| |||||||| |||||||| | |||||||||||||||||| |||||||||||||| |
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|
| T |
49188767 |
attaacgtgattggagtgtcgatcatgaggtgaaataagtttggcgtatttgagaaggctttcctgatcgtcaacacgaggaccaattgtgaagacggcg |
49188866 |
T |
|
| Q |
101 |
gggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaa |
200 |
Q |
| |
|
||||| || ||||| ||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
49188867 |
gggagaacaaaaggaagtttctcggcactcatagcttgaacttcaaaggtgtagtttaccggtgagaggtccaagacagtgcaggattgaccgggaaaaa |
49188966 |
T |
|
| Q |
201 |
tccatgctttctttt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
49188967 |
tccatgctttctttt |
49188981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 49203604 - 49203879
Alignment:
| Q |
1 |
attaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggca |
100 |
Q |
| |
|
|||||| |||||||||||| |||||| || ||||| |||||||| |||||||| |||||||| | |||||||||||||||||| || ||||| |||||| |
|
|
| T |
49203604 |
attaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgtcaacacgaggaccaatagtgaaaacggca |
49203703 |
T |
|
| Q |
101 |
gggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaa |
200 |
Q |
| |
|
||||| || ||||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| | |||||| ||||| |||| || |
|
|
| T |
49203704 |
gggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgaccgggaataa |
49203803 |
T |
|
| Q |
201 |
tccatgctttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
276 |
Q |
| |
|
|||||||||||||| |||| |||| || | || || |||||||||||||||||||||||||||||||| |
|
|
| T |
49203804 |
tccatgctttctttgcaagttttatgtctttgatgagaatacctgttatcacaaggtattctgatgcctttgctac |
49203879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 49192504 - 49192778
Alignment:
| Q |
2 |
ttaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggcag |
101 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||| |||||||| |||||||| |||||||| | ||| || |||||||||||||| |||||||| || | |
|
|
| T |
49192504 |
ttaacatgattggagagtttatcgtgcggtgaaataagtttggcgtatttgagaaggctttccttatcatccacacgaggaccgatagtgaagacagcgg |
49192603 |
T |
|
| Q |
102 |
ggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaat |
201 |
Q |
| |
|
|||| || ||||| ||||| || || ||||| ||||||||||| |||||||| || || ||||||||||||||||| | | |||||||||| || | ||| |
|
|
| T |
49192604 |
ggagaacaaaaggaagtttctctgcgctcattgcttgaacttcaaaggtgtaatttacaggtgagaggtcgaagacggagtaggattgaccgggtagaat |
49192703 |
T |
|
| Q |
202 |
ccatgctttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
276 |
Q |
| |
|
||||||||||||| | ||||||| || | |||||| || |||||||||||||||| |||||| |||||||| |
|
|
| T |
49192704 |
ccatgctttctttgcgagctttatgtctttgattccgattccggttatcacaaggtattgtgatgcttttgctac |
49192778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 29622814 - 29622726
Alignment:
| Q |
128 |
ctcatggcttgaacttcgaaggtgtagttcaccggtg--agaggtcgaagacagtgcaggattgacctggaaaaatccatgctttcttt |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||| ||| |||| ||||||| |
|
|
| T |
29622814 |
ctcattgcttgaacttcgaaggtgtagttcaccggtgagagaggtcgaagacggtgcaggattgcctgggaagaattcatgatttcttt |
29622726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 51825292 - 51825563
Alignment:
| Q |
5 |
acgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggcaggga |
104 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
51825292 |
acgtggttcgagagtttatcatgaggggaaatcagtttagcgtatttgaggaggctttcgtgatcgtcaacacgaggaccaattgtgaagaccgcaggaa |
51825391 |
T |
|
| Q |
105 |
ggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaatcca |
204 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
51825392 |
gaacgaaaggcagtttttcggcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtggaagattgaccagggaaaatcca |
51825491 |
T |
|
| Q |
205 |
tgctttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
276 |
Q |
| |
|
|| ||||||| |||| || | || || |||||||| || |||| ||| ||||| || ||||| |||||||| |
|
|
| T |
51825492 |
tgatttctttgcaagtttgatgtcttcgattccggctccggttaacaccaggtactcggatgcttttgctac |
51825563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 31527886 - 31528160
Alignment:
| Q |
2 |
ttaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggcag |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||| | |||||||||||||||||| ||||||||||| || | |
|
|
| T |
31527886 |
ttaacgtgattcgagagtttatcatgaggggaaatcagtttagcgtatttgaggaggctttcctgatcgtcaacacgaggaccaattgtgaagacagcgg |
31527985 |
T |
|
| Q |
102 |
ggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaat |
201 |
Q |
| |
|
| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| || ||||| |
|
|
| T |
31527986 |
gaagaacgaaaggcagtttttcggcactcatggcttgaacttcgaaggtgtagttcaccggagagaggtcgaaaacggtgcaagattgaccagggaaaat |
31528085 |
T |
|
| Q |
202 |
ccatgctttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
276 |
Q |
| |
|
||||| ||||||| |||| || | || || |||||||| || |||||||| || || || ||||| |||||||| |
|
|
| T |
31528086 |
ccatgatttctttgcaagtttgatgtcttcgattccggctccggttatcaccagatactcggatgcttttgctac |
31528160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 32592039 - 32591771
Alignment:
| Q |
8 |
tgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggcagggagga |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||| | ||| |||||||||||||| ||||||||||| || || || | |
|
|
| T |
32592039 |
tgattcgagagtttatcatgaggggaaatcagtttagcgtatttgaggaggctttcctgatcatcaacacgaggaccaattgtgaagacagcgggaagaa |
32591940 |
T |
|
| Q |
108 |
cgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaatccatgc |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||| ||||| |
|
|
| T |
32591939 |
cgaaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaacccatga |
32591840 |
T |
|
| Q |
208 |
tttcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctac |
276 |
Q |
| |
|
||||||| |||| || | || || ||||| || || |||||||| ||||| || ||||| |||||||| |
|
|
| T |
32591839 |
tttctttgcaagtttgatgtcttcgattccagctccggttatcaccaggtactcggatgcttttgctac |
32591771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 37031278 - 37031496
Alignment:
| Q |
1 |
attaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggca |
100 |
Q |
| |
|
|||||| ||||||||| || || |||| || ||||| |||||||| |||||||| |||||||| | ||| || ||||||||||| || |||||||| || |
|
|
| T |
37031278 |
attaacatgattggagtgtctagcatgcggtgaaataagtttggcgtatttgagaaggctttccttatcatccacacgaggaccaatagtgaagacagcg |
37031377 |
T |
|
| Q |
101 |
gggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaa |
200 |
Q |
| |
|
||||| || ||||| ||||| || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||| || |
|
|
| T |
37031378 |
gggagaacaaaaggaagtttctccgcgctcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacagagcaggattgaccgggaagaa |
37031477 |
T |
|
| Q |
201 |
tccatgctttcttttcaag |
219 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
37031478 |
tccatgctttctttgcaag |
37031496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 26757146 - 26757313
Alignment:
| Q |
1 |
attaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtgaagacggca |
100 |
Q |
| |
|
|||||||||||||||| || ||||||| | |||||||||||||| |||||||| |||||||| | |||||| ||||||||||| || ||||| || || |
|
|
| T |
26757146 |
attaacgtgattggagtgtctatcatgctgtgaaattagtttggcgtatttgagaaggctttcatgatcgtccacacgaggacctatagtgaacacagcg |
26757245 |
T |
|
| Q |
101 |
gggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagag |
168 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||| || |||||||| |
|
|
| T |
26757246 |
gggagaacgaatgggagtttttcagcactcattgcttgaactttgaaggtgtagtttactggtgagag |
26757313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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