View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_30 (Length: 280)
Name: NF19519_low_30
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_30 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 34183428 - 34183549
Alignment:
| Q |
159 |
aaagtacaaattttaaatatagcaaaaatgttaatttgttgcattttttcatatgcacatgcacatctaggacagtacaccgtacgtttccatatgcgat |
258 |
Q |
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| T |
34183428 |
aaagtacaaattttaaatatagcaaaaatgttaatttgttgcattttttcatatgcacatgcacatctaggacagtacaccgtacgtttccatatgcaat |
34183527 |
T |
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| Q |
259 |
gaatattattagctgtataaac |
280 |
Q |
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| T |
34183528 |
gaatattattagctgtataaac |
34183549 |
T |
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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 34183280 - 34183368
Alignment:
| Q |
11 |
aggctttcaaggtctttgacaaagatcaaaatggctatatatcagcaagtgaggtatataaataaaattgtttctattttgtaaagtaa |
99 |
Q |
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| T |
34183280 |
aggctttcaaggtctttgacaaagatcaaaatggctatatatcagccagtgaggtatataaataaaattgtttctattttgtaaagtaa |
34183368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 15350848 - 15350911
Alignment:
| Q |
11 |
aggctttcaaggtctttgacaaagatcaaaatggctatatatcagcaagtgaggtatataaata |
74 |
Q |
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| T |
15350848 |
aggctttcaaggtttttgataaagatcaaaatggttatatttccgctagtgaggtatataaata |
15350911 |
T |
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