View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_33 (Length: 260)

Name: NF19519_low_33
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_33
NF19519_low_33
[»] chr1 (1 HSPs)
chr1 (11-243)||(5130751-5130983)
[»] chr5 (9 HSPs)
chr5 (11-137)||(8677750-8677872)
chr5 (11-125)||(9074768-9074881)
chr5 (12-113)||(8535447-8535547)
chr5 (11-120)||(8636812-8636920)
chr5 (11-136)||(8644157-8644278)
chr5 (11-120)||(8528891-8528999)
chr5 (71-118)||(8548146-8548193)
chr5 (59-121)||(8641357-8641419)
chr5 (76-125)||(1600331-1600380)
[»] chr7 (2 HSPs)
chr7 (17-120)||(48361902-48362004)
chr7 (11-91)||(35779782-35779861)
[»] chr4 (1 HSPs)
chr4 (11-120)||(9443052-9443160)
[»] chr6 (1 HSPs)
chr6 (71-117)||(16716363-16716409)
[»] scaffold0627 (1 HSPs)
scaffold0627 (71-117)||(4663-4709)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 5130751 - 5130983
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130751 gaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 5130850  T
Q  111 ttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattatggaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130851 ttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattatggaaa 5130950  T
Q  211 gaacatgcatcagaaatgtaaagcaatcccttt 243  Q
    ||||| ||||||||||||||||| |||||||||    
T  5130951 gaacacgcatcagaaatgtaaagaaatcccttt 5130983  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 8677750 - 8677872
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 110  Q
    ||||||||||||||||| | | || |||||| ||||||| ||| || || ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  8677750 gaattcgaaaaactttgaaaccatgtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgtt 8677848  T
Q  111 ttaccggccaaaaacataaaccataat 137  Q
    |||||||||   |||||||||||||||    
T  8677849 ttaccggcc---aacataaaccataat 8677872  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 9074881 - 9074768
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 110  Q
    ||||||||||||||||| ||| ||||||||| ||||||| | |||| |||||| ||| || ||||||||| ||||||||||||||| |||||||||||||    
T  9074881 gaattcgaaaaactttgaatccatatttctcaggttcatag-aagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgtt 9074783  T
Q  111 ttaccggccaaaaac 125  Q
    ||| |||||| ||||    
T  9074782 ttatcggccataaac 9074768  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 8535447 - 8535547
Alignment:
Q  12 aattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttt 111  Q
    |||||||||||||| | ||| ||||||||| ||||||| ||| || |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  8535447 aattcgaaaaacttcgaatccatatttctcaggttcatagta-gataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgttt 8535545  T
Q  112 ta 113  Q
    ||    
T  8535546 ta 8535547  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 8636812 - 8636920
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 110  Q
    |||||| |||||||||| | | |  |||||| ||||||| ||| || || ||| |||||||||||||||| |||||||||||| ||||||||||||||||    
T  8636812 gaattctaaaaactttgaaaccaagtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtt 8636910  T
Q  111 ttaccggcca 120  Q
    ||||||||||    
T  8636911 ttaccggcca 8636920  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 8644157 - 8644278
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 110  Q
    ||||||||||||||||| |   || |||||  ||||||| ||| || || ||| |||||||||||||||| |||||||||||| ||||||||||||| ||    
T  8644157 gaattcgaaaaactttgaaagcatgtttcttgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtttt 8644255  T
Q  111 ttaccggccaaaaacataaaccataa 136  Q
    |||||||||   ||||||||||||||    
T  8644256 ttaccggcc---aacataaaccataa 8644278  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 8528891 - 8528999
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 110  Q
    ||||||||||||||||| | | |||||| || ||||| | ||| |  |||||| ||| |||||||||||  ||||||||||||||| |||||||||||||    
T  8528891 gaattcgaaaaactttgaacccatatttttcaggttcgtagtaggt-aaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgtt 8528989  T
Q  111 ttaccggcca 120  Q
    ||| ||||||    
T  8528990 ttatcggcca 8528999  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 8548193 - 8548146
Alignment:
Q  71 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggc 118  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  8548193 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 8548146  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 8641357 - 8641419
Alignment:
Q  59 aaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaa 121  Q
    ||||| |||||||||||||||| | |||  |||||||| |||||||||||| |||||||||||    
T  8641357 aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaa 8641419  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 1600380 - 1600331
Alignment:
Q  76 atatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaac 125  Q
    ||||| ||||||||||||||| ||||||||||||| || |||||| ||||    
T  1600380 atataacaatatggcagcaccttcttcaaagtgttgtatcggccataaac 1600331  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 48362004 - 48361902
Alignment:
Q  17 gaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccg 116  Q
    ||||| ||||||||||||||||||| |||||||  || ||  |||| || | |||||||||||| ||||||||||||||| |||||||||||||||| ||    
T  48362004 gaaaagctttgcatctatatttctcaggttcataata-gattaaacggtcgtaggaatgatataacaatatggcagcaccttcttcaaagtgttttatcg 48361906  T
Q  117 gcca 120  Q
    ||||    
T  48361905 gcca 48361902  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 35779782 - 35779861
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggca 91  Q
    ||||||||||||||||| ||| ||||||||| ||||||  || ||| |||||| ||||| |||||||||| ||||||||||    
T  35779782 gaattcgaaaaactttgtatccatatttctcaggttcaaagt-agataaaacaattgcatgaatgatataacaatatggca 35779861  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 9443052 - 9443160
Alignment:
Q  11 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtt 110  Q
    ||||||||||||||||| | | |||||| || ||||| | ||| |  |||||| ||| |||||||||||  ||||||||||||||| |||||||||||||    
T  9443052 gaattcgaaaaactttgaacccatatttttcaggttcgtagtaggt-aaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgtt 9443150  T
Q  111 ttaccggcca 120  Q
    ||| ||||||    
T  9443151 ttatcggcca 9443160  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 16716363 - 16716409
Alignment:
Q  71 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 117  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||    
T  16716363 gaatgatataacaatacgccagcaccctcttcaaagtgttttaccgg 16716409  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 4663 - 4709
Alignment:
Q  71 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 117  Q
    ||||||| || |||||  |||||||||||||||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccgg 4709  T

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