View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_35 (Length: 246)
Name: NF19519_low_35
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_35 |
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| [»] scaffold0087 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 2715555 - 2715624
Alignment:
| Q |
128 |
gccattcaactgattgtgggaaagatctagaaatacaagagaaggaaagtgaacaagtcattttggaaat |
197 |
Q |
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| T |
2715555 |
gccattcaactgattgtgggaaagatctagaaatacaagagaaggaaagtgaacaagtcattttggaaat |
2715624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 2715494 - 2715558
Alignment:
| Q |
33 |
agtcgagcgattctaacattttcatatgaccaatgttgctgggaaaggtttaatccaaccaatgcca |
99 |
Q |
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| T |
2715494 |
agtcgagcgattctaacattttcatatgacaaatgttgct--gaaaggtttaatccaaccaatgcca |
2715558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 5853787 - 5853753
Alignment:
| Q |
35 |
tcgagcgattctaacattttcatatgaccaatgtt |
69 |
Q |
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| T |
5853787 |
tcgagcgattctaacattttcatatgaccaatgtt |
5853753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 5163654 - 5163610
Alignment:
| Q |
33 |
agtcgagcgattctaacattttcatatgaccaatgttgctgggaa |
77 |
Q |
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| T |
5163654 |
agtcgagtgattccaacattttcatatgaccaatgttgttgggaa |
5163610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 5883942 - 5883906
Alignment:
| Q |
41 |
gattctaacattttcatatgaccaatgttgctgggaa |
77 |
Q |
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| T |
5883942 |
gattctaacattttcatatgaccaatgttgttgggaa |
5883906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 5830848 - 5830804
Alignment:
| Q |
33 |
agtcgagcgattctaacattttcatatgaccaatgttgctgggaa |
77 |
Q |
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| T |
5830848 |
agtcgagtgattctaacctttccatatgaccaatgttgctaggaa |
5830804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 5881226 - 5881198
Alignment:
| Q |
41 |
gattctaacattttcatatgaccaatgtt |
69 |
Q |
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| T |
5881226 |
gattctaacattttcatatgaccaatgtt |
5881198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 20512 - 20469
Alignment:
| Q |
75 |
gaaaggtttaatccaaccaatgccacgagttttgttatactttg |
118 |
Q |
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| T |
20512 |
gaaaggtttaaaccagctaatgccacgagttttgttatactttg |
20469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 30860 - 30817
Alignment:
| Q |
75 |
gaaaggtttaatccaaccaatgccacgagttttgttatactttg |
118 |
Q |
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| T |
30860 |
gaaaggtttaaaccagctaatgccacgagttttgttatactttg |
30817 |
T |
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