View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_36 (Length: 241)

Name: NF19519_low_36
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_36
NF19519_low_36
[»] chr1 (1 HSPs)
chr1 (1-238)||(5130469-5130715)
[»] chr5 (9 HSPs)
chr5 (5-79)||(8677636-8677710)
chr5 (1-79)||(1600477-1600555)
chr5 (1-79)||(9074917-9074995)
chr5 (4-79)||(8535332-8535407)
chr5 (4-78)||(8528778-8528852)
chr5 (1-79)||(8548288-8548366)
chr5 (5-79)||(8644043-8644117)
chr5 (5-76)||(8636701-8636772)
chr5 (122-156)||(36551390-36551424)
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-79)||(4491-4569)
[»] chr4 (2 HSPs)
chr4 (4-78)||(9442939-9443013)
chr4 (124-156)||(49370040-49370072)
[»] chr6 (1 HSPs)
chr6 (1-79)||(16716178-16716256)
[»] chr7 (3 HSPs)
chr7 (1-53)||(35779694-35779746)
chr7 (122-156)||(46355860-46355894)
chr7 (14-79)||(48362064-48362129)
[»] chr3 (2 HSPs)
chr3 (122-156)||(26990456-26990490)
chr3 (122-156)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (122-156)||(2610832-2610866)
chr2 (122-156)||(17429294-17429328)
chr2 (122-156)||(39709205-39709239)
chr2 (122-159)||(33504468-33504505)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5130715 - 5130469
Alignment:
Q  1 catattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaagtggcttctaaaattttattta 100  Q
    |||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5130715 catatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggtaagtggcttctaaaattttattta 5130616  T
Q  101 cccaaatgaatctgatgctccccgaccccacttagtgagatatggcttggtt---------gttgaatctgaggctcccttaaaaatcaatcgtaattag 191  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||         ||||||||||||||| |||||||||||||||||||||||    
T  5130615 cccaaatgaatctgatgctccccgaccccacttaatgagatatggcttggttgttgttgttgttgaatctgaggcttccttaaaaatcaatcgtaattag 5130516  T
Q  192 tttgattcataagacatgtgtgagtttcctacattaccgtactgcct 238  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  5130515 tttgattcataagacatgtgtgagtttcctacattactgtaccgcct 5130469  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 8677710 - 8677636
Alignment:
Q  5 ttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  8677710 ttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaag 8677636  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1600477 - 1600555
Alignment:
Q  1 catattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    ||||||||||||||||||||| |||||||| |  ||||||| ||||||||||||||||||||||| |||||||||||||    
T  1600477 catattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaag 1600555  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9074917 - 9074995
Alignment:
Q  1 catattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    ||||||||||||||||||||| |||||||| |  |||||||||||||||| |||||||||||||| |||||||||||||    
T  9074917 catattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaag 9074995  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 8535407 - 8535332
Alignment:
Q  4 attccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    |||||||||||||||||| |||||||| || ||||||| |||||||||||||| |||||||| |||||||||||||    
T  8535407 attccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaag 8535332  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 8528852 - 8528778
Alignment:
Q  4 attccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaa 78  Q
    |||||||||||||||||| |||||||| || ||||||||| |||||||||||| |||||||| ||||||||||||    
T  8528852 attccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 8528778  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8548288 - 8548366
Alignment:
Q  1 catattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    ||||||||||||||||| ||| |||||||| |  ||||||||||||||||||||||||||||||| ||||||| |||||    
T  8548288 catattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaag 8548366  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 8644117 - 8644043
Alignment:
Q  5 ttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||    
T  8644117 ttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaag 8644043  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 8636772 - 8636701
Alignment:
Q  5 ttccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggt 76  Q
    ||||||||||||| ||| |||||||| | ||||||||||||||||| |||||||||||||| ||||||||||    
T  8636772 ttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 36551390 - 36551424
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttg 156  Q
    ||||||||||||||||||||| |||||||||||||    
T  36551390 ccgaccccacttagtgagataaggcttggttgttg 36551424  T

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Target: scaffold0627 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 4569 - 4491
Alignment:
Q  1 catattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    ||||||||||||||||| ||| ||||||||   |||||||||||||||||||||||| ||||||| |||||||||||||    
T  4569 catattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaag 4491  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 9443013 - 9442939
Alignment:
Q  4 attccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaa 78  Q
    |||||||||||||||||| |||||||| || ||||||||| |||||||||||| |||||||| ||||||||||||    
T  9443013 attccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 9442939  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 49370040 - 49370072
Alignment:
Q  124 gaccccacttagtgagatatggcttggttgttg 156  Q
    |||||||||||||| ||||||||||||||||||    
T  49370040 gaccccacttagtgggatatggcttggttgttg 49370072  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16716256 - 16716178
Alignment:
Q  1 catattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    ||||||||||||||||| ||| ||||||||   ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  16716256 catattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaag 16716178  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35779746 - 35779694
Alignment:
Q  1 catattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattga 53  Q
    ||||||||||||||||| ||| |||||||| |||| |||||||||||||||||    
T  35779746 catattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga 35779694  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 46355894 - 46355860
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttg 156  Q
    ||||||||||||||||||||| |||||||||||||    
T  46355894 ccgaccccacttagtgagataaggcttggttgttg 46355860  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 48362064 - 48362129
Alignment:
Q  14 taatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 79  Q
    |||||||| |||||||| |  |||||||||| ||||| |||||| ||||| | |||||||||||||    
T  48362064 taatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaag 48362129  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 26990456 - 26990490
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttg 156  Q
    ||||||||||||||||||||| |||||||||||||    
T  26990456 ccgaccccacttagtgagataaggcttggttgttg 26990490  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 53519824 - 53519858
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttg 156  Q
    ||||||||||||||||||||| |||||||||||||    
T  53519824 ccgaccccacttagtgagataaggcttggttgttg 53519858  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 2610832 - 2610866
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttg 156  Q
    ||||||||||||||||||||| |||||||||||||    
T  2610832 ccgaccccacttagtgagataaggcttggttgttg 2610866  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 17429294 - 17429328
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttg 156  Q
    ||||||||||||||||||||| |||||||||||||    
T  17429294 ccgaccccacttagtgagataaggcttggttgttg 17429328  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 39709239 - 39709205
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttg 156  Q
    |||||||||||||||| ||||||||||||||||||    
T  39709239 ccgaccccacttagtgggatatggcttggttgttg 39709205  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 33504468 - 33504505
Alignment:
Q  122 ccgaccccacttagtgagatatggcttggttgttgaat 159  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504468 ccgaccccacttagtgggataaggcttggttgttgaat 33504505  T

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