View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_38 (Length: 239)
Name: NF19519_low_38
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 3774263 - 3774452
Alignment:
| Q |
36 |
atgaggtgttgggttt-aattgggtgagcgtaagaatgacatgttagtgg--gagttcatctaataatttcttttatttcatataggaacagatttggtc |
132 |
Q |
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| T |
3774263 |
atgaggtgttgggttttaattgggtgagcgtaagaatgacatgtta-tggaagagttcatctaatcatttttcttatttcatataggaacagatttggtc |
3774361 |
T |
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| Q |
133 |
catccaatnnnnnnntgccacgtaagctactgccagaattcaccttcatgtgcgcggcgcatagtatagtcctaagtaggtcctaatgatg |
223 |
Q |
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|||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3774362 |
catccaataaaaaaatgccacgtaagctaatgccagaatttaccttcatgtgcgcggcgcatagtatagtcctaagtaggtcctaatgatg |
3774452 |
T |
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