View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19519_low_4 (Length: 781)
Name: NF19519_low_4
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 43 - 767
Target Start/End: Original strand, 43255239 - 43255951
Alignment:
| Q |
43 |
gtcgagacagagattgtgtttcgagcaaaagagaaagatcatgtaaatgaagaggttttgtggatctggatcggtggcagcaaaagatgtgatggtggtg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
43255239 |
gtcgagacagagattgtgtttcgagcaaaagagaaagatcatgtaaatgaagaggt----------------ggggcaagcaaaagatgtgatggtggtg |
43255322 |
T |
|
| Q |
143 |
acat----ggtaaggaggatggaatttggattgggatgggcaagcaagtaacaaaaggaacctttcatgagaaagggaaaacttccattaaggaaggggt |
238 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255323 |
acatatatggtaaggaggatggaatttggattgggaggggcaagcaagtaacaaaaggaacctttcatgagaaagggaaaacttccattaaggaaggggt |
43255422 |
T |
|
| Q |
239 |
gcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgcca |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
43255423 |
gcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaggatgcta |
43255522 |
T |
|
| Q |
339 |
agacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
43255523 |
agacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataat |
43255622 |
T |
|
| Q |
439 |
acattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaa |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255623 |
acattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaa |
43255722 |
T |
|
| Q |
539 |
gagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaa |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255723 |
gagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaa |
43255822 |
T |
|
| Q |
639 |
accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaacca |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255823 |
accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaacca |
43255922 |
T |
|
| Q |
739 |
ggattgtaccaatcttggagtcttctgtg |
767 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43255923 |
ggattgtaccaatcttggagtcttctgtg |
43255951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 238 - 767
Target Start/End: Original strand, 43258688 - 43259217
Alignment:
| Q |
238 |
tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgcc |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
43258688 |
tgcaacaaagaagttaacacacaaagatgctgaatatttctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaagatgct |
43258787 |
T |
|
| Q |
338 |
aagacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataa |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
43258788 |
aagacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataa |
43258887 |
T |
|
| Q |
438 |
tacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaaca |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43258888 |
tacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaaca |
43258987 |
T |
|
| Q |
538 |
agagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaa |
637 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43258988 |
agagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattccttcaatgatttctcatctttaccaa |
43259087 |
T |
|
| Q |
638 |
aaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaacc |
737 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43259088 |
aaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggagcc |
43259187 |
T |
|
| Q |
738 |
aggattgtaccaatcttggagtcttctgtg |
767 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
43259188 |
aggattgtaccaatcttggaatcttctgtg |
43259217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 428 - 731
Target Start/End: Original strand, 43247615 - 43247918
Alignment:
| Q |
428 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
|
| Q |
528 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctca |
627 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctca |
43247814 |
T |
|
| Q |
628 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttc |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
43247815 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttc |
43247914 |
T |
|
| Q |
728 |
ccat |
731 |
Q |
| |
|
|||| |
|
|
| T |
43247915 |
ccat |
43247918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 469 - 564
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
469 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
564 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |
|
|
| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 428 - 482
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
428 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 43226006 - 43226066
Alignment:
| Q |
238 |
tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttct |
300 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
43226006 |
tgcaacaaagaagttaacacac--agataccgaatatttctagttcttgtacatgtcatttct |
43226066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University