View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_42 (Length: 211)
Name: NF19519_low_42
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_42 |
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| [»] scaffold2028 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 12830133 - 12830323
Alignment:
| Q |
1 |
aactaactcagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacatcttaatctatttgtcctttaacacttca |
100 |
Q |
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| T |
12830133 |
aactaactcagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacatcttaatctatttgtcctttaacacttca |
12830232 |
T |
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| Q |
101 |
tgatatctattttctttattgcaaaaaatatatgccaatggttcactccatgtttgaggcatgtgattattcacatagcagtgtatgtgga |
191 |
Q |
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| T |
12830233 |
tgatatctattttctttattgcaaaaactatatgccaatggttcactccatgtttgaggcatgtgattattcacatagcagtgtatgtgga |
12830323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 25974015 - 25974107
Alignment:
| Q |
3 |
ctaactcagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacatcttaatctatttgtcctttaaca |
95 |
Q |
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| T |
25974015 |
ctaactcaactataattgttaagctagatcaattacacatagttacttgctatacaagtaacagatacatctcaatctatttgtcctttaaca |
25974107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2028 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold2028
Description:
Target: scaffold2028; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 260 - 189
Alignment:
| Q |
1 |
aactaactcagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacat |
72 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
260 |
aactaactcagttacatttgttaagctagatcaattacacatagttacttgctatacaagtaacagatacat |
189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 6147 - 6218
Alignment:
| Q |
1 |
aactaactcagttacaattgttaagctagatcaattacacatagttacttgctatacacgtaagaaatacat |
72 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
6147 |
aactaactcagttacatttgttaagctagatcaattacacatagttacttgctatacaagtaacagatacat |
6218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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