View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_6 (Length: 626)
Name: NF19519_low_6
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 610
Target Start/End: Original strand, 5173912 - 5174501
Alignment:
| Q |
18 |
taggacctatgttatgttgtaagagacccgagtcatttcattcaagtgtttttggagtgtatgcacataatttatttttgtgagtatatatattagaatg |
117 |
Q |
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| T |
5173912 |
taggacctatgttatgttgtaagagacccgagtcatttcattcaagtgtttttggagtgtatgcacataatttaattttgtgagtatatatattagaatg |
5174011 |
T |
|
| Q |
118 |
tcacaattgcaggccgtattgttgatatcgacacaaagttaaaggttttacaaaggagacaagctgtattgttatgaaattaatatatgttgtgtagtgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5174012 |
tcacaattgcaggccgtattgttgatatcgacacaaagttaaaggttttacaaaggagacaagctgtattgttatgaaattaatatatgttatgtagtgt |
5174111 |
T |
|
| Q |
218 |
tttggacaactaattatgttatattatcatcgcatagcagttatgaaaaggtgacaaactgataatcttatgcaaaagttgtcctgttttgattgtttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174112 |
tttggacaactaattatgttatattatcatcgcatagcagttatgaaaaggtgacaaactgataatcttatgcaaaagttgtcctgttttgattgtttgt |
5174211 |
T |
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| Q |
318 |
tacattataatatggttatagtccccaatttagaactttaattataaaataaatgaaggcaaataatgacatatgaataggtctacaataatccttggct |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174212 |
tacattataatatggttttagtccccaatttagaactttaattataaaataaatgaaggcaaataatgacatatgaataggtctacaataatccttggct |
5174311 |
T |
|
| Q |
418 |
ctcacgttaccacctttaagaacgatgatatagatcctaggataatttatgtttaaatgtaaccataaaacaactaagt-aggtattagtaacagttgta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5174312 |
ctcacgttaccacctttaagaacgatgatatagatcctaggataatttatgttttaatgtaaccataaaacaactaagtaaggtattagtaacagttgta |
5174411 |
T |
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| Q |
517 |
gtttttgtcatatttgatacttgtcattttcaacccctttctcttcctatataggcctttttaattagtttggaagggttggaaaagacaaaag |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
5174412 |
gtttttgtcatatttgatacttgtcattttcaacccctttctcttcctatacaggccttt----ttagtttggaagggttggaaaagacaaaag |
5174501 |
T |
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