View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19519_low_7 (Length: 602)
Name: NF19519_low_7
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Complemental strand, 4775832 - 4775237
Alignment:
| Q |
1 |
caagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
4775832 |
caagaacttcaaattccattaactgcaccaacaatattctaagacaacattggagctacatatctatgtgcaaaccctgtctttca---ctctaggatga |
4775736 |
T |
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| Q |
101 |
agcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775735 |
agcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttct |
4775636 |
T |
|
| Q |
201 |
aacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775635 |
aacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaact |
4775536 |
T |
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| Q |
301 |
taagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaattagtatagttgactgttccat |
400 |
Q |
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| T |
4775535 |
taagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccat---------------agtatagttgactgttccat |
4775451 |
T |
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| Q |
401 |
gattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaac---attttctattgacttgaatataacagaacg---------t |
488 |
Q |
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| T |
4775450 |
gattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaacattattttctattgacttgaatataacagaacgtatttatcct |
4775351 |
T |
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| Q |
489 |
atacattgcaggtggctacagaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtt |
588 |
Q |
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| T |
4775350 |
atacatcgcaggtggctacagaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtt |
4775251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 574
Target Start/End: Complemental strand, 29553195 - 29553130
Alignment:
| Q |
509 |
gaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaa |
574 |
Q |
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| T |
29553195 |
gaggatagatggatttggcatttacactcttctcagagttacacagttagcaatgcgtataataaa |
29553130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 43061193 - 43060836
Alignment:
| Q |
1 |
caagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatga |
100 |
Q |
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||||||||||||||||||||||| |||||||| ||||||| ||| |||||| ||||||||| |||||||||||||||||| ||||| || |||||||| |
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| T |
43061193 |
caagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttcacta---taggatga |
43061097 |
T |
|
| Q |
101 |
agcatattgccatagattatcattttgttcgcgatctcgttgccgc---caagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatct |
197 |
Q |
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| T |
43061096 |
aacacattgccatagattatcattttgtttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatct |
43060997 |
T |
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| Q |
198 |
tctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtatta |
297 |
Q |
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| T |
43060996 |
tctcacaaagccgttatcctcggtacgacatcacttccttaaagacaagattggagttattgatgatacctccatcttgagcgggcgtgtaggagtatta |
43060897 |
T |
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| Q |
298 |
acttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcat |
358 |
Q |
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| T |
43060896 |
acttaagcatttaccaaatcaaataacaatggttgtaatgatatcagtaaatggaaatcat |
43060836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 427 - 485
Target Start/End: Complemental strand, 43060807 - 43060749
Alignment:
| Q |
427 |
tatatgtatatatggccacacaaatgttaacattttctattgacttgaatataacagaa |
485 |
Q |
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| T |
43060807 |
tatatatatatattaccacacaaatgttaatattttctattgacttgaatacaacagaa |
43060749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 285 - 453
Target Start/End: Complemental strand, 448677 - 448506
Alignment:
| Q |
285 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
381 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
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| Q |
382 |
gtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgt |
453 |
Q |
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| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatatggctacacaaatgt |
448506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
46 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
86 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 42019520 - 42019449
Alignment:
| Q |
232 |
ttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaa |
303 |
Q |
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| T |
42019520 |
ttccttaaagacaagattggagttcttgaagataactccattttcagggggagtaaaggagtatttacttaa |
42019449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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