View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19519_low_8 (Length: 543)

Name: NF19519_low_8
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19519_low_8
NF19519_low_8
[»] chr5 (6 HSPs)
chr5 (43-528)||(43255239-43255712)
chr5 (238-528)||(43258688-43258978)
chr5 (428-528)||(43247615-43247715)
chr5 (428-482)||(43254090-43254144)
chr5 (469-528)||(43233964-43234023)
chr5 (238-300)||(43226006-43226066)


Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 43 - 528
Target Start/End: Original strand, 43255239 - 43255712
Alignment:
Q  43 gtcgagacagagattgtgtttcgagcaaaagagaaagatcatgtaaatgaagaggttttgtggatctggatcggtggcagcaaaagatgtgatggtggtg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                || |  ||||||||||||||||||||||    
T  43255239 gtcgagacagagattgtgtttcgagcaaaagagaaagatcatgtaaatgaagaggt----------------ggggcaagcaaaagatgtgatggtggtg 43255322  T
Q  143 acat----ggtaaggaggatggaatttggattgggatgggcaagcaagtaacaaaaggaacctttcatgagaaagggaaaacttccattaaggaaggggt 238  Q
    ||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43255323 acatatatggtaaggaggatggaatttggattgggaggggcaagcaagtaacaaaaggaacctttcatgagaaagggaaaacttccattaaggaaggggt 43255422  T
Q  239 gcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgcca 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  43255423 gcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaggatgcta 43255522  T
Q  339 agacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataat 438  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  43255523 agacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataat 43255622  T
Q  439 acattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaact 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43255623 acattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaact 43255712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 238 - 528
Target Start/End: Original strand, 43258688 - 43258978
Alignment:
Q  238 tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgcc 337  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||     
T  43258688 tgcaacaaagaagttaacacacaaagatgctgaatatttctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaagatgct 43258787  T
Q  338 aagacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataa 437  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  43258788 aagacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataa 43258887  T
Q  438 tacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaact 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43258888 tacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaact 43258978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 43247615 - 43247715
Alignment:
Q  428 atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||| ||||||||||||||||||    
T  43247615 atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac 43247714  T
Q  528 t 528  Q
    |    
T  43247715 t 43247715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 428 - 482
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
Q  428 atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43254090 atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt 43254144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 469 - 528
Target Start/End: Original strand, 43233964 - 43234023
Alignment:
Q  469 aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaact 528  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  43233964 aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaact 43234023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 43226006 - 43226066
Alignment:
Q  238 tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttct 300  Q
    ||||||||||||||||||||||  |||| | ||||  |||||||||||||| |||||||||||    
T  43226006 tgcaacaaagaagttaacacac--agataccgaatatttctagttcttgtacatgtcatttct 43226066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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