View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19519_low_9 (Length: 533)
Name: NF19519_low_9
Description: NF19519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19519_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 123 - 521
Target Start/End: Complemental strand, 33964996 - 33964598
Alignment:
| Q |
123 |
ccaatcatacaaagaaaattatttcaaactcaaatttaaccattctcctatctaatactcgtttttatatgatcatatttttctctcaaaaacttaaacc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
33964996 |
ccaatcatacaaagaaaattatttcaaactcaaatttaaccattttcctatctaatactcgtttttatatgatcatatttttctctgaaaaacataaacc |
33964897 |
T |
|
| Q |
223 |
acacttaactcctaccattctttcattctatagcttaaaattagcagcccttctctctaaaatatttcaatcatttctctctaatggtttttgatgtaag |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33964896 |
acacttaactcctaccattctttcattctatagcttaaaattagcagcccttctctctaaaatatttcaatcatttctctctaatggtttttgatgtaag |
33964797 |
T |
|
| Q |
323 |
aacacacattttcaacaaactcaaaactgagggagcagttgacacattatcaaaaccatcttaatctataaggatacagtagaggaggtcatttcaaatg |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33964796 |
aacacacattttcaacaaactcaaaactgagggagcagttgacacattatcaaaaccatcctaatctataaggatacagtagaggaggtcatttcaaatt |
33964697 |
T |
|
| Q |
423 |
aagggcattttcctgatcaatacaattgttatgatgaacacggtttgttttttggaccggtcttccatgctacggatagaacggcctctcttgtgatga |
521 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33964696 |
aagggcattttcctaatcaatacaattgttatgatgaacacggtttgtgttttggaccggtcttccatgctacggatagaacggcttctcttgtgatga |
33964598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 33967997 - 33967909
Alignment:
| Q |
19 |
aactatcaacagataaagagatttgttaaattaattaagttctgccgtgtttaggattgaaaaaatgcaatatctaaataacattaccg |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33967997 |
aactatcaacagataaagagatttgctaaattaattaagttctgccgtgtttaggattgaaaaaatgcaatatctaaataacattaccg |
33967909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University