View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1951_high_15 (Length: 212)
Name: NF1951_high_15
Description: NF1951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1951_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 42893602 - 42893416
Alignment:
| Q |
9 |
gagagagaagaattgaattgaattgaagtagtaatattgggtagaagaagagtgtaaattgaggccaagaaatgtattaattgtttggaaaaatcccaag |
108 |
Q |
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| T |
42893602 |
gagagagaagaattgaattgaattgaagtagtaatattgggtagaagaagagtgtaaattgaggccaagaaatgtattaattgtttggaaaaatcccaag |
42893503 |
T |
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| Q |
109 |
aactatgcaggaattggaaatttgtggagtagtaaatattgcaattacacaaactgcagaaggaggccctttccttcattcattgct |
195 |
Q |
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| T |
42893502 |
aactatgcaggaattggaaatttgtggagtagtaaatattgcaattacacaaactgcagaaggaggccctttccttcattcattgct |
42893416 |
T |
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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 25584580 - 25584653
Alignment:
| Q |
45 |
ttgggtagaagaagagtgtaaattgaggccaagaaatgtattaattgtttggaaaaatcccaagaactatgcag |
118 |
Q |
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| T |
25584580 |
ttgggtagaagaagagtgtaaattgtggccaggaaatgtattaattgtttggaaaaatcccaagaagtatgcag |
25584653 |
T |
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