View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1951_low_1 (Length: 670)
Name: NF1951_low_1
Description: NF1951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1951_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 11 - 653
Target Start/End: Original strand, 53096052 - 53096694
Alignment:
| Q |
11 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
110 |
Q |
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| T |
53096052 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
53096151 |
T |
|
| Q |
111 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096152 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttc |
53096251 |
T |
|
| Q |
211 |
caacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattagaactccacactttgatccttggtgtactctgggttggtgacattc |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096252 |
caacatcaaaactatttccatttctcgtcccatttgagttttgtgctttgattagaactccacactttgatccttggtgtactctgggttggtgacattc |
53096351 |
T |
|
| Q |
311 |
ataacgctcgggttctttggcaccatgnnnnnnnggaacttctaaactccggatgagctgactaatgtgaacatgagctgcacaactcttccatgacttt |
410 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096352 |
ataacgctcgggttctttggcaccatgtttttttggaacttctaaactccggatgagctgactaatgtgaacatgagctgcacaactcttccatgacttt |
53096451 |
T |
|
| Q |
411 |
ttatgaacaacaggttcggaaatctgcattgtcattaaacatttattattggaaacaactaataggcatttgagtggagtgcatcaactatgatgaaaaa |
510 |
Q |
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| T |
53096452 |
ttatgaacaacaggttcggaaatctgcatcgtcattaaacatttattattggaaacaactaataggcatttgagtggagagcatcaactatgatgaaaaa |
53096551 |
T |
|
| Q |
511 |
cttcttaatcatgcaaaacaacaatactaagcatgaatttttagtttcttacctttccacctgaagaacaactttccatcaaatcgtgtttggagttgca |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096552 |
cttcttaatcatgcaaaacaacaatactaagcatgaatttttagtttcttacctttccacctgaagaacaactttccatcaaatcgtgtttggagttgca |
53096651 |
T |
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| Q |
611 |
aatagcagcattcagccaatgtggagctttagcggcagcagaa |
653 |
Q |
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| T |
53096652 |
aatagcagcattcagccaatgtggagctttagcggcagcagaa |
53096694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 332
Target Start/End: Complemental strand, 1369483 - 1369335
Alignment:
| Q |
183 |
atgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattagaactccacactttgatc |
282 |
Q |
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||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| | | ||| ||||||| |
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| T |
1369483 |
atgtccaaactagtagtatgaactgttccagcatcaaaactatttccatttctcatcccattagagttttgtgctttgattagga-tatacattttgatc |
1369385 |
T |
|
| Q |
283 |
cttggtgtactctgggttggtgacattcataacgctcgggttctttggca |
332 |
Q |
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|||||| ||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
1369384 |
tttggtgaactctggtttggtgacattcataacgctcagattctttggca |
1369335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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