View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1951_low_12 (Length: 253)

Name: NF1951_low_12
Description: NF1951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1951_low_12
NF1951_low_12
[»] scaffold0006 (6 HSPs)
scaffold0006 (35-236)||(80589-80789)
scaffold0006 (76-157)||(129480-129562)
scaffold0006 (192-236)||(129379-129423)
scaffold0006 (192-236)||(215675-215719)
scaffold0006 (76-157)||(215779-215861)
scaffold0006 (1-33)||(80818-80850)
[»] chr1 (7 HSPs)
chr1 (73-236)||(16756632-16756791)
chr1 (167-236)||(13484169-13484238)
chr1 (76-157)||(13600823-13600905)
chr1 (36-119)||(13484298-13484381)
chr1 (192-236)||(13600722-13600766)
chr1 (96-157)||(20575822-20575884)
chr1 (76-112)||(19154254-19154290)


Alignment Details
Target: scaffold0006 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 80789 - 80589
Alignment:
Q  35 atctccataatcttcgaaacaatattccttnnnnnnngcataatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacact 134  Q
    |||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  80789 atctccataatctttgaaacaatattccttaaaaaa-gcataatcatccatatagtatgcaaagtttcaaacatatattgtcactaatccatataacact 80691  T
Q  135 ttatttttcagagcacctgtgaacnnnnnnnnctcaatatcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggt 234  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80690 ttatttttcagagcacctgtgaacaaaaaaaactcaatatcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggt 80591  T
Q  235 tc 236  Q
    ||    
T  80590 tc 80589  T

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Target: scaffold0006; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 129562 - 129480
Alignment:
Q  76 aatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 157  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| || |||| ||||||||  ||||||||||||||| ||||    
T  129562 aatcatccatattgtatgcaaagtttcaaacatatattgttactgatccatacaacactttgttttttcagagcacctatgaa 129480  T

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Target: scaffold0006; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 129423 - 129379
Alignment:
Q  192 atataaactagatgcatattgatcataagagtgaaaccaaggttc 236  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  129423 atataaactagatgcatattgatcataagagtgcaaccaaggttc 129379  T

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Target: scaffold0006; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 215719 - 215675
Alignment:
Q  192 atataaactagatgcatattgatcataagagtgaaaccaaggttc 236  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  215719 atataaactagatgcatattgatcataagagtgcaaccaaggttc 215675  T

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Target: scaffold0006; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 215861 - 215779
Alignment:
Q  76 aatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 157  Q
    |||||||||||| ||||||||||||| ||||||||||||| | | || |||| | ||||||  ||||||||||||||| ||||    
T  215861 aatcatccatattgtatgcaaagtttaaaacatatattgttattgatccatacagcactttgttttttcagagcacctatgaa 215779  T

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Target: scaffold0006; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 80850 - 80818
Alignment:
Q  1 aatggagaaacaaatgaatcacagtttcatctt 33  Q
    |||||||||||||||||||||||||||||||||    
T  80850 aatggagaaacaaatgaatcacagtttcatctt 80818  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 16756632 - 16756791
Alignment:
Q  73 cataatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacactttatttttcagagcacctgtgaacnnnnnnnnctcaat 172  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| || |||| | |||||| ||||||||||||||| ||||         || |||    
T  16756632 cataatcatccatgtagtatgcaaagtttcaaacatatattgacactgatccatacatcactttgtttttcagagcacctatgaa----aaaaacttaat 16756727  T
Q  173 atcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggttc 236  Q
    |||||| ||||||  ||| |||||||||| |||||||||||||||||||||| ||||| |||||    
T  16756728 atcatataatttcgttatgatataaactaaatgcatattgatcataagagtgcaaccatggttc 16756791  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 13484238 - 13484169
Alignment:
Q  167 ctcaatatcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggttc 236  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  13484238 ctcaatatcatataatttcactatgatataaactagatgcatattgatcataagagtgcaaccaaggttc 13484169  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 13600905 - 13600823
Alignment:
Q  76 aatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 157  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| || |||| ||||||||  ||||||||||||||| ||||    
T  13600905 aatcatccatattgtatgcaaagtttcaaacatatattgttactgatccatacaacactttgttttttcagagcacctatgaa 13600823  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 13484381 - 13484298
Alignment:
Q  36 tctccataatcttcgaaacaatattccttnnnnnnngcataatcatccatatagtatgcaaagtttcaaacatatattgtcact 119  Q
    ||||||||||||| |||||||| ||||||        |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  13484381 tctccataatctttgaaacaattttcctttcaaaaaacataattatccacatagtatgcaaagtttcaaacatatattgtcact 13484298  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 13600766 - 13600722
Alignment:
Q  192 atataaactagatgcatattgatcataagagtgaaaccaaggttc 236  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  13600766 atataaactagatgcatattgatcataagagtgcaaccaaggttc 13600722  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 20575884 - 20575822
Alignment:
Q  96 aagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 157  Q
    ||||||||||||||||||||| || || |||| ||||||||  ||||||||||||| ||||||    
T  20575884 aagtttcaaacatatattgtctctgatgcatacaacactttgttttttcagagcacatgtgaa 20575822  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 19154254 - 19154290
Alignment:
Q  76 aatcatccatatagtatgcaaagtttcaaacatatat 112  Q
    |||||||||||| |||||| |||||||||||||||||    
T  19154254 aatcatccatattgtatgctaagtttcaaacatatat 19154290  T

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