View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1951_low_18 (Length: 236)
Name: NF1951_low_18
Description: NF1951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1951_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 12076797 - 12077031
Alignment:
| Q |
1 |
gtctttagaacgacatag--tcttttcataattgaatttagttatatcactttgaagcggtaaataaagccaacaatctaaacaaaaagttggatacttg |
98 |
Q |
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| T |
12076797 |
gtctttagaacgacatagagtcttttcataattgaatttagttataccactttgaagcggtaaataaagccaacaatctaaacaaaaagttggatacttg |
12076896 |
T |
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| Q |
99 |
acattgcatgagagaaaaacctattccaaattgttccctcttatannnnnnnnactaacaaaaactattataatcaaataaaggtagatta----ataca |
194 |
Q |
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| T |
12076897 |
acattgcatgagagaaaaacctattacaaattgttccctcttattttttttttactaacaaaaactattataatcaaataaaggtagattaatatataca |
12076996 |
T |
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| Q |
195 |
tttaattgacagctgaatccataaactgatgatgt |
229 |
Q |
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| T |
12076997 |
tttaattgacagcggaatccataaactgatgatgt |
12077031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 12062049 - 12062182
Alignment:
| Q |
94 |
acttgacattgcatgagagaaaaacctattccaaattgttccctcttatannnnnnnnacta--acaaaaactattataatcaaataaaggtagattaat |
191 |
Q |
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||||||||||||||||||| |||| ||||||||||| |||| ||||| || |||| |||| |||||||||||| |||||||||||||||||| |
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| T |
12062049 |
acttgacattgcatgagagcaaaatctattccaaatcgttctctcttgtattctttt-actataacaataactattataataaaataaaggtagattaat |
12062147 |
T |
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| Q |
192 |
acatttaattgacagctgaatccataaactgatga |
226 |
Q |
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| T |
12062148 |
acagttaattgacagcggaatccataaaccgatga |
12062182 |
T |
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