View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1951_low_2 (Length: 613)

Name: NF1951_low_2
Description: NF1951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1951_low_2
NF1951_low_2
[»] chr1 (31 HSPs)
chr1 (46-280)||(15951187-15951421)
chr1 (320-359)||(19172587-19172626)
chr1 (320-359)||(25469098-25469137)
chr1 (320-359)||(34309242-34309281)
chr1 (320-359)||(46391878-46391917)
chr1 (321-359)||(4433859-4433897)
chr1 (321-359)||(13142679-13142717)
chr1 (321-359)||(24991972-24992010)
chr1 (321-359)||(47967864-47967902)
chr1 (321-359)||(49680813-49680851)
chr1 (321-358)||(17172675-17172712)
chr1 (320-359)||(7559211-7559250)
chr1 (320-359)||(11548801-11548840)
chr1 (320-359)||(13263528-13263567)
chr1 (320-359)||(25468511-25468550)
chr1 (320-359)||(27256724-27256763)
chr1 (320-359)||(30663359-30663398)
chr1 (320-359)||(30663988-30664027)
chr1 (321-356)||(30932810-30932845)
chr1 (320-359)||(34308474-34308513)
chr1 (321-359)||(4439218-4439256)
chr1 (321-359)||(10120785-10120823)
chr1 (321-359)||(10121564-10121602)
chr1 (321-359)||(11704820-11704858)
chr1 (321-359)||(13262835-13262873)
chr1 (321-359)||(17171933-17171971)
chr1 (321-359)||(24992756-24992794)
chr1 (372-433)||(32039130-32039192)
chr1 (321-359)||(37577657-37577695)
chr1 (323-359)||(45818025-45818061)
chr1 (363-395)||(46812174-46812206)
[»] chr4 (33 HSPs)
chr4 (363-597)||(16903428-16903662)
chr4 (363-447)||(42059360-42059444)
chr4 (320-359)||(20774192-20774231)
chr4 (320-359)||(30573721-30573760)
chr4 (320-359)||(53732437-53732476)
chr4 (321-359)||(2444375-2444413)
chr4 (321-359)||(19550289-19550327)
chr4 (321-359)||(47688491-47688529)
chr4 (321-359)||(53772810-53772848)
chr4 (323-359)||(52871303-52871339)
chr4 (323-359)||(55001452-55001488)
chr4 (320-359)||(8247698-8247737)
chr4 (320-359)||(8248532-8248571)
chr4 (320-359)||(8266197-8266236)
chr4 (320-359)||(16903680-16903719)
chr4 (320-359)||(19080387-19080426)
chr4 (320-359)||(24158832-24158871)
chr4 (320-355)||(31329733-31329768)
chr4 (320-359)||(47785811-47785850)
chr4 (320-359)||(53147873-53147912)
chr4 (324-359)||(55976172-55976207)
chr4 (321-359)||(599313-599351)
chr4 (321-359)||(3654527-3654565)
chr4 (329-359)||(16903655-16903685)
chr4 (321-359)||(24551698-24551736)
chr4 (321-359)||(24551935-24551973)
chr4 (321-359)||(26147044-26147082)
chr4 (321-359)||(42882693-42882731)
chr4 (329-359)||(53733743-53733773)
chr4 (321-359)||(53773598-53773636)
chr4 (321-359)||(55000690-55000728)
chr4 (321-359)||(55976967-55977005)
chr4 (322-359)||(8265365-8265402)
[»] chr6 (11 HSPs)
chr6 (363-595)||(5861919-5862151)
chr6 (320-359)||(10171277-10171316)
chr6 (320-359)||(26529524-26529563)
chr6 (321-359)||(8488471-8488509)
chr6 (320-359)||(19311838-19311877)
chr6 (320-359)||(19323778-19323817)
chr6 (320-359)||(33436285-33436324)
chr6 (321-359)||(10171977-10172015)
chr6 (329-359)||(19322993-19323023)
chr6 (321-359)||(26528825-26528863)
chr6 (321-357)||(12344896-12344932)
[»] scaffold0085 (2 HSPs)
scaffold0085 (365-586)||(15117-15338)
scaffold0085 (320-359)||(22082-22121)
[»] chr2 (24 HSPs)
chr2 (360-595)||(15774763-15774999)
chr2 (320-359)||(29719448-29719487)
chr2 (321-359)||(1297134-1297172)
chr2 (321-359)||(9275589-9275627)
chr2 (321-359)||(11750260-11750298)
chr2 (321-359)||(15902893-15902931)
chr2 (321-359)||(29513158-29513196)
chr2 (320-359)||(1296381-1296420)
chr2 (320-359)||(9276341-9276380)
chr2 (320-359)||(9540333-9540372)
chr2 (320-359)||(22560579-22560618)
chr2 (320-359)||(36237633-36237672)
chr2 (320-359)||(42459053-42459092)
chr2 (329-359)||(11007242-11007272)
chr2 (321-359)||(12725626-12725664)
chr2 (329-359)||(16692985-16693015)
chr2 (321-359)||(22301881-22301919)
chr2 (321-359)||(27177915-27177953)
chr2 (322-359)||(18820436-18820473)
chr2 (321-358)||(26589029-26589066)
chr2 (322-359)||(26752734-26752771)
chr2 (363-403)||(1296413-1296453)
chr2 (363-403)||(9276308-9276348)
chr2 (323-359)||(40252027-40252063)
[»] scaffold0002 (1 HSPs)
scaffold0002 (363-589)||(428696-428920)
[»] chr8 (16 HSPs)
chr8 (362-408)||(31603002-31603048)
chr8 (320-359)||(41974642-41974681)
chr8 (321-359)||(38576313-38576351)
chr8 (320-359)||(3165133-3165172)
chr8 (320-359)||(8372915-8372954)
chr8 (320-359)||(8373704-8373743)
chr8 (320-359)||(31641513-31641552)
chr8 (320-359)||(37732828-37732867)
chr8 (360-403)||(38575589-38575632)
chr8 (321-359)||(11686229-11686267)
chr8 (321-359)||(14825646-14825684)
chr8 (321-359)||(27441469-27441507)
chr8 (329-359)||(32414535-32414565)
chr8 (323-359)||(26654389-26654425)
chr8 (323-359)||(28929850-28929886)
chr8 (362-402)||(37734209-37734249)
[»] scaffold0176 (1 HSPs)
scaffold0176 (320-359)||(26593-26632)
[»] chr7 (34 HSPs)
chr7 (320-359)||(7668483-7668522)
chr7 (320-359)||(13785605-13785644)
chr7 (320-359)||(25599023-25599062)
chr7 (320-359)||(26636104-26636143)
chr7 (320-359)||(30661467-30661506)
chr7 (320-359)||(37949606-37949645)
chr7 (320-359)||(45099905-45099944)
chr7 (320-359)||(46428188-46428227)
chr7 (321-359)||(25342499-25342537)
chr7 (321-359)||(25343305-25343343)
chr7 (321-359)||(30660595-30660633)
chr7 (321-359)||(37950479-37950517)
chr7 (321-359)||(47719716-47719754)
chr7 (323-359)||(43065128-43065164)
chr7 (320-359)||(3903351-3903390)
chr7 (320-355)||(18977785-18977820)
chr7 (320-359)||(19067638-19067677)
chr7 (320-359)||(19068407-19068446)
chr7 (320-359)||(26636872-26636911)
chr7 (320-359)||(46428829-46428868)
chr7 (321-359)||(1417610-1417648)
chr7 (321-359)||(3029210-3029248)
chr7 (321-359)||(3772538-3772576)
chr7 (321-359)||(16664137-16664175)
chr7 (321-359)||(17638497-17638535)
chr7 (321-359)||(23901106-23901144)
chr7 (321-359)||(24389628-24389666)
chr7 (321-359)||(24719337-24719375)
chr7 (321-359)||(27948448-27948486)
chr7 (321-359)||(31278166-31278204)
chr7 (321-355)||(37395515-37395549)
chr7 (321-359)||(38225987-38226025)
chr7 (321-359)||(45161971-45162009)
chr7 (363-403)||(25343218-25343258)
[»] chr5 (22 HSPs)
chr5 (320-359)||(234702-234741)
chr5 (320-359)||(237832-237871)
chr5 (320-359)||(6476802-6476841)
chr5 (320-359)||(10554523-10554562)
chr5 (320-359)||(19128771-19128810)
chr5 (320-359)||(19359705-19359744)
chr5 (320-359)||(28705890-28705929)
chr5 (320-359)||(29046030-29046069)
chr5 (321-359)||(235594-235632)
chr5 (321-359)||(1281838-1281876)
chr5 (321-359)||(1283536-1283574)
chr5 (321-359)||(7632097-7632135)
chr5 (320-359)||(14478922-14478961)
chr5 (320-359)||(19360487-19360526)
chr5 (320-359)||(27364498-27364537)
chr5 (320-359)||(29087926-29087965)
chr5 (321-359)||(236940-236978)
chr5 (329-359)||(1283511-1283541)
chr5 (321-359)||(1554094-1554132)
chr5 (329-359)||(10554557-10554587)
chr5 (322-359)||(25858213-25858250)
chr5 (320-356)||(34709051-34709087)
[»] chr3 (19 HSPs)
chr3 (320-359)||(21727541-21727580)
chr3 (320-359)||(48648205-48648244)
chr3 (321-359)||(17603171-17603209)
chr3 (323-359)||(265110-265146)
chr3 (320-359)||(14871155-14871194)
chr3 (320-359)||(37988230-37988269)
chr3 (320-359)||(46150741-46150780)
chr3 (320-359)||(48649185-48649224)
chr3 (320-359)||(48765082-48765121)
chr3 (320-359)||(55373718-55373757)
chr3 (321-359)||(17603973-17604011)
chr3 (329-359)||(17605717-17605747)
chr3 (321-359)||(31974654-31974692)
chr3 (329-359)||(48413330-48413360)
chr3 (347-395)||(29853960-29854009)
chr3 (330-359)||(44699832-44699861)
chr3 (322-359)||(46149633-46149670)
chr3 (323-359)||(37987238-37987274)
chr3 (323-359)||(40872820-40872856)
[»] scaffold2007 (1 HSPs)
scaffold2007 (320-359)||(752-791)
[»] scaffold0504 (1 HSPs)
scaffold0504 (320-359)||(5391-5430)
[»] scaffold0096 (1 HSPs)
scaffold0096 (324-359)||(39901-39936)
[»] scaffold0093 (1 HSPs)
scaffold0093 (321-359)||(23740-23778)
[»] scaffold0012 (1 HSPs)
scaffold0012 (329-359)||(181020-181050)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 15951187 - 15951421
Alignment:
Q  46 aagaacaaatatgtgctgtaacctttcctcgtattttcttctttctcccgacacttcatctttttctctgcaatgtcaagtcctttccatcatcaccact 145  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15951187 aagaacaaatatgtgctgtaacctttccttgtattttcttctttctcccgacacttcatctttttctctgcaatgtcaagtcctttccatcatcaccact 15951286  T
Q  146 gccattcatggcggaactttcttttatttgcttttgaaagtataatttgcttgacaactttagaagaagaatttatcgtggtcttatcccaggtttcatt 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15951287 gccattcatggcggaactttcttttatttgctttcgaaagtataatttgctggacaactttagaagaagaatttatcgtggtcttatcccaggtttcatt 15951386  T
Q  246 ttagttcatttgctaatttctgtcactaaatcgca 280  Q
    |||||||||||||||||||||||||||||||||||    
T  15951387 ttagttcatttgctaatttctgtcactaaatcgca 15951421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 19172626 - 19172587
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  19172626 caggatccattgacaccaggtgtcaacggattcgttgaca 19172587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 25469137 - 25469098
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  25469137 caggatccgttgacaccaggtgtcaacggattcgttgaca 25469098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 34309281 - 34309242
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  34309281 caggatccgttgacaccaggtgtcaacggattcgttgaca 34309242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 46391917 - 46391878
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  46391917 caggatccgttgacaccaggtgtcaacggattcgttgaca 46391878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 4433897 - 4433859
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  4433897 aggatccgttgacaccaggtgtcaacggattcgttgaca 4433859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 13142717 - 13142679
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  13142717 aggatcccttgacaccaggtgtcaacggattcgttgaca 13142679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 24991972 - 24992010
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  24991972 aggatccattgacaccaggtgtcaacggattcgttgaca 24992010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 47967864 - 47967902
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  47967864 aggatccattgacaccaggtgtcaacggattcgttgaca 47967902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 49680813 - 49680851
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  49680813 aggatccgttgacaccaggtgtcaacggattcgttgaca 49680851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 17172712 - 17172675
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgac 358  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  17172712 aggatccgttgacaccaggtgtcaacggattcgttgac 17172675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 7559250 - 7559211
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  7559250 caggatccgttgacaccaggtgtcaacggatccgttgaca 7559211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 11548801 - 11548840
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  11548801 caggatccgttgacaccaggtgtcaacagattcgttgaca 11548840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 13263567 - 13263528
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  13263567 caggatccgttgacaccaggtgtcaatggattcgttgaca 13263528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 25468511 - 25468550
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  25468511 caggatccattgacaccaggtgtcaacggattcattgaca 25468550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 27256763 - 27256724
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  27256763 caggatccgttgacaccaggtgtcaacgtattcgttgaca 27256724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 30663359 - 30663398
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30663359 caggatccgttgacaccaggtatcaacggattcgttgaca 30663398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 30664027 - 30663988
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  30664027 caggatccgttgacacctggtgtcaacggattcgttgaca 30663988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 356
Target Start/End: Complemental strand, 30932845 - 30932810
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttg 356  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30932845 aggatccgttgacaccaggtgtcaacggattcgttg 30932810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 34308474 - 34308513
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  34308474 caggatccgttgacaccaggtgtcaacgtattcgttgaca 34308513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 4439256 - 4439218
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  4439256 aggatccgttgacacctggtgtcaacggattcgttgaca 4439218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 10120785 - 10120823
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  10120785 aggatccgttgacaccaggtgtcaacggattggttgaca 10120823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 10121602 - 10121564
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  10121602 aggatccgttgacaccaggtgtcaacggattggttgaca 10121564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 11704858 - 11704820
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  11704858 aggatccattgacaccaagtgtcaacggattcgttgaca 11704820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 13262835 - 13262873
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  13262835 aggatccgttgacaccaggtgtcaacgaattcgttgaca 13262873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 17171933 - 17171971
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  17171933 aggatccgttgacaccaggtgtcaacgaattcgttgaca 17171971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 24992794 - 24992756
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  24992794 aggatccactgacaccaggtgtcaacggattcgttgaca 24992756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 32039192 - 32039130
Alignment:
Q  372 caaatctcaaccgtcaatctattttaatcaaagactagt-aatattctctaaattgactcacg 433  Q
    |||||||||||||||||| |||||||||||||| ||| | |||| | | ||||||||||||||    
T  32039192 caaatctcaaccgtcaatttattttaatcaaaggctaataaataatttttaaattgactcacg 32039130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 37577695 - 37577657
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  37577695 aggatccattgataccaggtgtcaacggattcgttgaca 37577657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 45818025 - 45818061
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  45818025 gatccgttgacaccaggtgtcaacggattcattgaca 45818061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 46812206 - 46812174
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattt 395  Q
    |||||||||||||||||||||||| ||||||||    
T  46812206 cgttgacaccaaatctcaaccgtctatctattt 46812174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 363 - 597
Target Start/End: Complemental strand, 16903662 - 16903428
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattttaatcaaagactagtaatattctctaaattgactcacgctagtgtatccttatttaattaattttga 462  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  16903662 cgttgacaccaaatctcaaccgtcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgtatccttacttaattacttttga 16903563  T
Q  463 tggcaatttaaaatcacaatgatgtttgttcaacnnnnnnntaaatcatactgatgctcaattgttttttctggacaatgcgctgctctccaccatctcc 562  Q
    |||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16903562 tggccatttaaaatcacaatgatgtttgttcaacaaaaaaataaatcatactgatgctcaattgttttttctggacaatgcgctgctctccaccacctcc 16903463  T
Q  563 actccttgatttatttctcatatagattgcaacgt 597  Q
    |||||||||||||||||||||||||||||||||||    
T  16903462 actccttgatttatttctcatatagattgcaacgt 16903428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 42059444 - 42059360
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattttaatcaaagactagtaatattctctaaattgactcacgctagtgtatcctta 447  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  42059444 cgttgacaccaaatttcaaccgtcgatctattttaatcaaaggctaataatattctctaaattgactcacgccagtgtatcctta 42059360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 20774231 - 20774192
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  20774231 caggatccattgacaccaggtgtcaacggattcgttgaca 20774192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 30573760 - 30573721
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  30573760 caggatccattgacaccaggtgtcaacggattcgttgaca 30573721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 53732437 - 53732476
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  53732437 caggatccgttgacaccaggtgtcaacggattcgttgaca 53732476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 2444375 - 2444413
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  2444375 aggatccgttgacaccaggtgtcaacggattcgttgaca 2444413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 19550289 - 19550327
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  19550289 aggatcccttgacaccaggtgtcaacggattcgttgaca 19550327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 47688529 - 47688491
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  47688529 aggatccgttgacaccaggtgtcaacggattcgttgaca 47688491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 53772810 - 53772848
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  53772810 aggatccgttgacaccaggtgtcaacggattcgttgaca 53772848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 52871303 - 52871339
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| |||||||||||||||||||||||||||||||    
T  52871303 gatccgttgacaccaggtgtcaacggattcgttgaca 52871339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 55001488 - 55001452
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| |||||||||||||||||||||||||||||||    
T  55001488 gatccgttgacaccaggtgtcaacggattcgttgaca 55001452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 8247698 - 8247737
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  8247698 caggatccgttgacacctggtgtcaacggattcgttgaca 8247737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 8248571 - 8248532
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  8248571 caggatccgttgacaccagatgtcaacggattcgttgaca 8248532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 8266236 - 8266197
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  8266236 caggatccgttgacaccagatgtcaacggattcgttgaca 8266197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 16903719 - 16903680
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  16903719 caggattcgttgacaccaggtgtcaacggattcgttgaca 16903680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 19080387 - 19080426
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  19080387 caggatctgttgacaccaggtgtcaacggattcgttgaca 19080426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 24158871 - 24158832
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  24158871 caggatccattgacaccaggtgtcaacagattcgttgaca 24158832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 31329768 - 31329733
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgtt 355  Q
    |||||||| |||||||||||||||||||||||||||    
T  31329768 caggatccgttgacaccaggtgtcaacggattcgtt 31329733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 47785850 - 47785811
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  47785850 caggatctgttgacaccaggtgtcaacggattcgttgaca 47785811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 53147873 - 53147912
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  53147873 caggatccattgacaccagatgtcaacggattcgttgaca 53147912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 55976172 - 55976207
Alignment:
Q  324 atcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||| |||||||||||||||||||||||||||||||    
T  55976172 atccgttgacaccaggtgtcaacggattcgttgaca 55976207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 599351 - 599313
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  599351 aggatccgttgacacctggtgtcaacggattcgttgaca 599313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 3654565 - 3654527
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  3654565 aggatccgttgacgccaggtgtcaacggattcgttgaca 3654527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 16903685 - 16903655
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  16903685 ttgacaccaggtgtcaacggattcgttgaca 16903655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 24551698 - 24551736
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  24551698 aggatccattgacaccaggtgtcgacggattcgttgaca 24551736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 24551973 - 24551935
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  24551973 aggatccattgacaccaggtgtcaacggatttgttgaca 24551935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 26147082 - 26147044
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  26147082 aggatccgttgacaccaggtgtcaacgaattcgttgaca 26147044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 42882731 - 42882693
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  42882731 aggatccgttgacaccagatgtcaacggattcgttgaca 42882693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 53733773 - 53733743
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  53733773 ttgacaccaggtgtcaacggattcgttgaca 53733743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 53773636 - 53773598
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  53773636 aggatccgttgacatcaggtgtcaacggattcgttgaca 53773598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 55000690 - 55000728
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  55000690 aggatccattgacaccagatgtcaacggattcgttgaca 55000728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 55977005 - 55976967
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  55977005 aggatccatcgacaccaggtgtcaacggattcgttgaca 55976967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 8265365 - 8265402
Alignment:
Q  322 ggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  8265365 ggatccgttgacacctggtgtcaacggattcgttgaca 8265402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 1e-89; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 363 - 595
Target Start/End: Original strand, 5861919 - 5862151
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattttaatcaaagactagtaatattctctaaattgactcacgctagtgtatccttatttaattaattttga 462  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  5861919 cgttgacaccaaatctcaaccatcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgtatccttacttaattacttttga 5862018  T
Q  463 tggcaatttaaaatcacaatgatgtttgttcaacnnnnnnntaaatcatactgatgctcaattgttttttctggacaatgcgctgctctccaccatctcc 562  Q
    ||||||||||||||||||||||||||||||||||       ||||||| | |||||||||||||||||||||| ||||||||||| |||||||||  |||    
T  5862019 tggcaatttaaaatcacaatgatgtttgttcaacaaaaaaataaatcacaatgatgctcaattgttttttctgaacaatgcgctgatctccaccacatcc 5862118  T
Q  563 actccttgatttatttctcatatagattgcaac 595  Q
    |||||||||||||||||||||||||||||||||    
T  5862119 actccttgatttatttctcatatagattgcaac 5862151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 10171277 - 10171316
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  10171277 caggatccgttgacaccaggtgtcaacggattcgttgaca 10171316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 26529563 - 26529524
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  26529563 caggatccgttgacaccaggtgtcaacggattcgttgaca 26529524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 8488471 - 8488509
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  8488471 aggatccattgacaccaggtgtcaacggattcgttgaca 8488509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 19311877 - 19311838
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  19311877 caggattcgttgacaccaggtgtcaacggattcgttgaca 19311838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 19323817 - 19323778
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  19323817 caggatccgttgacaccaggtgtcaacgaattcgttgaca 19323778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 33436324 - 33436285
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  33436324 caggatccgttgacaccagatgtcaacggattcgttgaca 33436285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 10172015 - 10171977
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  10172015 aggatccgttgacaccaggtgtcaacgcattcgttgaca 10171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 19322993 - 19323023
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  19322993 ttgacaccaggtgtcaacggattcgttgaca 19323023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 26528825 - 26528863
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  26528825 aggatccgttgacaccaggtgtcaacgcattcgttgaca 26528863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 12344896 - 12344932
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttga 357  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  12344896 aggatccattgacaccaggtgtcaacagattcgttga 12344932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 365 - 586
Target Start/End: Original strand, 15117 - 15338
Alignment:
Q  365 ttgacaccaaatctcaaccgtcaatctattttaatcaaagactagtaatattctctaaattgactcacgctagtgtatccttatttaattaattttgatg 464  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  15117 ttgacaccaaatctcaaccgtcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgtatccttacttaattacttttgatg 15216  T
Q  465 gcaatttaaaatcacaatgatgtttgttcaacnnnnnnntaaatcatactgatgctcaattgttttttctggacaatgcgctgctctccaccatctccac 564  Q
    ||||||||||||||||||||||||||||||||       ||||||| | ||| |||||||||||| |||||||||||||||||||||||||||  |||||    
T  15217 gcaatttaaaatcacaatgatgtttgttcaacaaaaaaataaatcacaatgaagctcaattgtttgttctggacaatgcgctgctctccaccacatccac 15316  T
Q  565 tccttgatttatttctcatata 586  Q
    ||||||||||||| ||||||||    
T  15317 tccttgatttattgctcatata 15338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 22121 - 22082
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  22121 caggatccgttgacaccaggtgtcaacggattcgttgaca 22082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 360 - 595
Target Start/End: Complemental strand, 15774999 - 15774763
Alignment:
Q  360 atccgttgacaccaaatctcaaccgtcaatctattttaatcaaagactagtaatattctctaaattgactcacgctagtgtatccttatttaattaattt 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||    
T  15774999 atccgttgacaccaaatctcaaccgtcaatctattttaatcaaaggctagtaatattctctaaattgactcacgctaatgtatccttacttaattacttt 15774900  T
Q  460 tgatggcaatttaaaatcacaatgatgtttgttc-aacnnnnnnntaaatcatactgatgctcaattgttttttctggacaatgcgctgctctccaccat 558  Q
    |||||||| ||||||||||||||||||||||||| ||         ||| || | ||||||||||||||||||||| ||||||||||||||||||||||     
T  15774899 tgatggcactttaaaatcacaatgatgtttgttcaaaaaaaaaaaaaaaacacaatgatgctcaattgttttttctagacaatgcgctgctctccaccac 15774800  T
Q  559 ctccactccttgatttatttctcatatagattgcaac 595  Q
    |||||||||||||||||||||| ||||||||||||||    
T  15774799 ctccactccttgatttatttcttatatagattgcaac 15774763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 29719448 - 29719487
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  29719448 caggatccgttgacaccaggtgtcaacggattcgttgaca 29719487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 1297172 - 1297134
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  1297172 aggatccgttgacaccaggtgtcaacggattcgttgaca 1297134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 9275589 - 9275627
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  9275589 aggatccgttgacaccaggtgtcaacggattcgttgaca 9275627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 11750260 - 11750298
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  11750260 aggatccattgacaccaggtgtcaacggattcgttgaca 11750298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 15902931 - 15902893
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  15902931 aggatccgttgacaccaggtgtcaacggattcgttgaca 15902893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 29513196 - 29513158
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29513196 aggatccattgacaccaggtgtcaacggattcgttgaca 29513158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 1296381 - 1296420
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  1296381 caggatccgttgacaccaggtgtcaacgaattcgttgaca 1296420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 9276380 - 9276341
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  9276380 caggatccgttgacaccaggtgtcaacgaattcgttgaca 9276341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 9540333 - 9540372
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  9540333 caggatccgttgacaccaggtgtcaacgaattcgttgaca 9540372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 22560618 - 22560579
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  22560618 caggatccgttgacatcaggtgtcaacggattcgttgaca 22560579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 36237633 - 36237672
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  36237633 caggatccgttgacaccaggtgtcaacggattcattgaca 36237672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 42459053 - 42459092
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  42459053 caggatccattgacaccaggtgtcaacagattcgttgaca 42459092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 11007242 - 11007272
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  11007242 ttgacaccaggtgtcaacggattcgttgaca 11007272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 12725664 - 12725626
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  12725664 aggatccgttgacaccaggtgtcaacggatttgttgaca 12725626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 16693015 - 16692985
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  16693015 ttgacaccaggtgtcaacggattcgttgaca 16692985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 22301919 - 22301881
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  22301919 aggatccgttgacaccaggtgtcaacgaattcgttgaca 22301881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 27177915 - 27177953
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  27177915 aggatccgttgacaccaggtgtcaacgaattcgttgaca 27177953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 18820436 - 18820473
Alignment:
Q  322 ggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  18820436 ggatccattgacatcaggtgtcaacggattcgttgaca 18820473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 26589066 - 26589029
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgac 358  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  26589066 aggatccgttgacaccaagtgtcaacggattcgttgac 26589029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 26752771 - 26752734
Alignment:
Q  322 ggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  26752771 ggatccgttgacaccaggtgtcaacgaattcgttgaca 26752734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 1296413 - 1296453
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattttaatcaaa 403  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  1296413 cgttgacaccaaatctcaaccatcaattttttttaatcaaa 1296453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 9276348 - 9276308
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattttaatcaaa 403  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  9276348 cgttgacaccaaatctcaaccatcaattttttttaatcaaa 9276308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 40252027 - 40252063
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| || ||||||||||||||||||||||||||||    
T  40252027 gatccattaacaccaggtgtcaacggattcgttgaca 40252063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 363 - 589
Target Start/End: Complemental strand, 428920 - 428696
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattttaatcaaagactagtaatattctctaaattgactcacgctagtgtatccttatttaattaattttga 462  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||  |||||| ||||||    
T  428920 cgttgacaccaaatctcaaccgccaatctattttaatcaaaggctaataatattctctaaattgactcacgctaatgtatccttacgtaattacttttga 428821  T
Q  463 tggcaatttaaaatcacaatgatgtttgttcaacnnnnnnntaaatcatactgatgctcaattgttttttctggacaatgcgctgctctccaccatctcc 562  Q
    || |||||||||||| |||| ||||||||||| |        || ||  | ||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  428820 tgacaatttaaaatcccaattatgtttgttcaccaaaaaagaaactc--aatgatgctcaattgttttttctggacaatgcgctactctccaccacatcc 428723  T
Q  563 actccttgatttatttctcatatagat 589  Q
    | |||||||||||||||||||||||||    
T  428722 attccttgatttatttctcatatagat 428696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 31603048 - 31603002
Alignment:
Q  362 ccgttgacaccaaatctcaaccgtcaatctattttaatcaaagacta 408  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  31603048 ccgttgacaccaaatctcaaccgtcaatttactttaatcaaagacta 31603002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 41974642 - 41974681
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  41974642 caggatccgttgacaccaggtgtcaacggattcgttgaca 41974681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 38576351 - 38576313
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  38576351 aggatccgttgacaccaggtgtcaacggattcgttgaca 38576313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 3165172 - 3165133
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  3165172 caggatccgttgacatcaggtgtcaacggattcgttgaca 3165133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 8372915 - 8372954
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  8372915 caggatccgttgacacctggtgtcaacggattcgttgaca 8372954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 8373743 - 8373704
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  8373743 caggatccgttgacaccaagtgtcaacggattcgttgaca 8373704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 31641513 - 31641552
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  31641513 caggatccattgacaccaggtgtcaatggattcgttgaca 31641552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 37732828 - 37732867
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  37732828 caggatccgttgacacctggtgtcaacggattcgttgaca 37732867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 38575589 - 38575632
Alignment:
Q  360 atccgttgacaccaaatctcaaccgtcaatctattttaatcaaa 403  Q
    |||||||||||||||||||||||| ||||| | |||||||||||    
T  38575589 atccgttgacaccaaatctcaaccatcaattttttttaatcaaa 38575632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 11686229 - 11686267
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  11686229 aggatccattggcaccaggtgtcaacggattcgttgaca 11686267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 14825646 - 14825684
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  14825646 aggatccgttgacactaggtgtcaacggattcgttgaca 14825684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 27441469 - 27441507
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  27441469 aggatccgttgacaccaggtgtcaacgaattcgttgaca 27441507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 32414565 - 32414535
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  32414565 ttgacaccaggtgtcaacggattcgttgaca 32414535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 26654425 - 26654389
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  26654425 gatccgttgacaccaggtgtcaatggattcgttgaca 26654389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 28929850 - 28929886
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  28929850 gatccattgacaccagatgtcaacggattcgttgaca 28929886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 37734249 - 37734209
Alignment:
Q  362 ccgttgacaccaaatctcaaccgtcaatctattttaatcaa 402  Q
    ||||||||||||||||||||||||| |||| || |||||||    
T  37734249 ccgttgacaccaaatctcaaccgtccatcttttctaatcaa 37734209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 26593 - 26632
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  26593 caggatccgttgacaccaggtgtcaacggattcgttgaca 26632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 7668483 - 7668522
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  7668483 caggatccgttgacaccaggtgtcaacggattcgttgaca 7668522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 13785644 - 13785605
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  13785644 caggatccgttgacaccaggtgtcaacggattcgttgaca 13785605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 25599023 - 25599062
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  25599023 caggatccgttgacaccaggtgtcaacggattcgttgaca 25599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 26636104 - 26636143
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  26636104 caggatccgttgacaccaggtgtcaacggattcgttgaca 26636143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 30661506 - 30661467
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  30661506 caggatccgttgacaccaggtgtcaacggattcgttgaca 30661467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 37949606 - 37949645
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  37949606 caggatccgttgacaccaggtgtcaacggattcgttgaca 37949645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 45099944 - 45099905
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  45099944 caggatccgttgacaccaggtgtcaacggattcgttgaca 45099905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 46428188 - 46428227
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  46428188 caggatccgttgacaccaggtgtcaacggattcgttgaca 46428227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 25342499 - 25342537
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  25342499 aggatccgttgacaccaggtgtcaacggattcgttgaca 25342537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 25343305 - 25343343
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  25343305 aggatccgttgacaccaggtgtcaacggattcgttgaca 25343343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 30660595 - 30660633
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  30660595 aggatccgttgacaccaggtgtcaacggattcgttgaca 30660633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 37950517 - 37950479
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  37950517 aggatccgttgacaccaggtgtcaacggattcgttgaca 37950479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 47719754 - 47719716
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  47719754 aggatccattgacaccaggtgtcaacggattcgttgaca 47719716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 43065164 - 43065128
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43065164 gatccgttgacaccaggtgtcaacggattcgttgaca 43065128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 3903390 - 3903351
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  3903390 caggatccgttgacaccaggtgtcaacggatccgttgaca 3903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 18977820 - 18977785
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgtt 355  Q
    |||||||| |||||||||||||||||||||||||||    
T  18977820 caggatccattgacaccaggtgtcaacggattcgtt 18977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 19067638 - 19067677
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  19067638 caggatccgttgacaccacgtgtcaacggattcgttgaca 19067677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 19068446 - 19068407
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  19068446 caggatccgttgacaccaggtgtcaacgtattcgttgaca 19068407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 26636911 - 26636872
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  26636911 caggatccgttgacacaaggtgtcaacggattcgttgaca 26636872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 46428868 - 46428829
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  46428868 caggatccgttgacaccaggtgtcaacgaattcgttgaca 46428829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 1417610 - 1417648
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  1417610 aggatccgttgacaccaggtgtcaacgaattcgttgaca 1417648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 3029248 - 3029210
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  3029248 aggatccgttgacaccaggtgtcaacgaattcgttgaca 3029210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 3772576 - 3772538
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  3772576 aggatccgttgacaccaggtgtcaacgtattcgttgaca 3772538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 16664175 - 16664137
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  16664175 aggatccgttgacaccaggtgtcaacggatccgttgaca 16664137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 17638535 - 17638497
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  17638535 aggatccgttgacaccaggtgtcaacggatccgttgaca 17638497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 23901144 - 23901106
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  23901144 aggatccattgacaccaggtgtcaacgaattcgttgaca 23901106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 24389666 - 24389628
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  24389666 aggatccgttgacaccaggtgtcaacggattcattgaca 24389628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 24719337 - 24719375
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  24719337 aggatccgttgacaccagatgtcaacggattcgttgaca 24719375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 27948448 - 27948486
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  27948448 aggatccgttgacaccaggtgtcaacgaattcgttgaca 27948486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 31278204 - 31278166
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  31278204 aggatccgttgacaccagatgtcaacggattcgttgaca 31278166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 37395549 - 37395515
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgtt 355  Q
    ||||||| |||||||||||||||||||||||||||    
T  37395549 aggatccgttgacaccaggtgtcaacggattcgtt 37395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 38226025 - 38225987
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  38226025 aggatccgttgacaccaggtgtcaacgaattcgttgaca 38225987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 45161971 - 45162009
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  45161971 aggatccattgacaccaggtgttaacggattcgttgaca 45162009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 25343258 - 25343218
Alignment:
Q  363 cgttgacaccaaatctcaaccgtcaatctattttaatcaaa 403  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  25343258 cgttgacaccaaatctcaaccatcaattttttttaatcaaa 25343218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 234702 - 234741
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  234702 caggatccgttgacaccaggtgtcaacggattcgttgaca 234741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 237871 - 237832
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  237871 caggatccgttgacaccaggtgtcaacggattcgttgaca 237832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 6476841 - 6476802
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  6476841 caggatccgttgacaccaggtgtcaacggattcgttgaca 6476802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 10554523 - 10554562
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  10554523 caggatccgttgacaccaggtgtcaacggattcgttgaca 10554562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 19128771 - 19128810
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  19128771 caggatccgttgacaccaggtgtcaacggattcgttgaca 19128810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 19359705 - 19359744
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  19359705 caggatccgttgacaccaggtgtcaacggattcgttgaca 19359744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 28705929 - 28705890
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  28705929 caggatccgttgacaccaggtgtcaacggattcgttgaca 28705890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 29046030 - 29046069
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  29046030 caggatccgttgacaccaggtgtcaacggattcgttgaca 29046069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 235594 - 235632
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  235594 aggatccattgacaccaggtgtcaacggattcgttgaca 235632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 1281838 - 1281876
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  1281838 aggatccattgacaccaggtgtcaacggattcgttgaca 1281876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 1283574 - 1283536
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  1283574 aggatccgttgacaccaggtgtcaacggattcgttgaca 1283536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 7632097 - 7632135
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  7632097 aggatccgttgacaccaggtgtcaacggattcgttgaca 7632135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 14478922 - 14478961
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  14478922 caggatccgttgacatcaggtgtcaacggattcgttgaca 14478961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 19360526 - 19360487
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  19360526 caggatccgttgacaccaggtgtcaacgaattcgttgaca 19360487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 27364537 - 27364498
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  27364537 caggatccgttgacaccaggtgtcaatggattcgttgaca 27364498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 29087926 - 29087965
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  29087926 caggatccgttgacaccaggtgtcaacggattcattgaca 29087965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 236978 - 236940
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  236978 aggatccattgacaccaggtgtcaacggattcgtagaca 236940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 1283541 - 1283511
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  1283541 ttgacaccaggtgtcaacggattcgttgaca 1283511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 1554132 - 1554094
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  1554132 aggatccgttgacaccaggtgtcaacgaattcgttgaca 1554094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 10554557 - 10554587
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  10554557 ttgacaccaggtgtcaacggattcgttgaca 10554587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 25858213 - 25858250
Alignment:
Q  322 ggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25858213 ggatccgttgacactaggtgtcaacggattcgttgaca 25858250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 34709087 - 34709051
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttg 356  Q
    |||||||  ||||||||||||||||||||||||||||    
T  34709087 caggatctgttgacaccaggtgtcaacggattcgttg 34709051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 21727580 - 21727541
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  21727580 caggatccgttgacaccaggtgtcaacggattcgttgaca 21727541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 48648205 - 48648244
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  48648205 caggatccgttgacaccaggtgtcaacggattcgttgaca 48648244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 17603171 - 17603209
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  17603171 aggatccgttgacaccaggtgtcaacggattcgttgaca 17603209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 265146 - 265110
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| |||||||||||||||||||||||||||||||    
T  265146 gatccgttgacaccaggtgtcaacggattcgttgaca 265110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 14871155 - 14871194
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  14871155 caggatccgttgacaccaggtgtcaacgaattcgttgaca 14871194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 37988269 - 37988230
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  37988269 caggatccattgacaccaggtgtcaacgaattcgttgaca 37988230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 46150780 - 46150741
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  46150780 caggatccgttgacactaggtgtcaacggattcgttgaca 46150741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 48649224 - 48649185
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  48649224 caggatccattgacaccaggtgtcaacagattcgttgaca 48649185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 48765121 - 48765082
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  48765121 caggatccattgacaccaggtgtcaatggattcgttgaca 48765082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 55373757 - 55373718
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  55373757 caggattcgttgacaccaggtgtcaacggattcgttgaca 55373718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 17604011 - 17603973
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  17604011 aggatccaatgacaccaggtgtcaacggattcgttgaca 17603973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 17605717 - 17605747
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  17605717 ttgacaccaggtgtcaacggattcgttgaca 17605747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 31974654 - 31974692
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  31974654 aggatccgttgacaccaagtgtcaacggattcgttgaca 31974692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 48413330 - 48413360
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  48413330 ttgacaccaggtgtcaacggattcgttgaca 48413360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 29853960 - 29854009
Alignment:
Q  347 ggattcgttgaca-atccgttgacaccaaatctcaaccgtcaatctattt 395  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||||||    
T  29853960 ggatccgttgacatattcgttgacaccaaatctcaaccgtctatctattt 29854009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 359
Target Start/End: Complemental strand, 44699861 - 44699832
Alignment:
Q  330 tgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||||||||||||||||||||||||||    
T  44699861 tgacaccaggtgtcaacggattcgttgaca 44699832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 46149633 - 46149670
Alignment:
Q  322 ggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  46149633 ggatccattgacaccaggtgtcaatggattcgttgaca 46149670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 37987238 - 37987274
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  37987238 gatccgttgacaccaggtgtcaatggattcgttgaca 37987274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 40872856 - 40872820
Alignment:
Q  323 gatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  40872856 gatccgttgacaccaggtgtcaacggattcattgaca 40872820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 752 - 791
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  752 caggatccattgacaccaggtttcaacggattcgttgaca 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 5430 - 5391
Alignment:
Q  320 caggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  5430 caggatccgttgacaccaggtgtcaacggatttgttgaca 5391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 39901 - 39936
Alignment:
Q  324 atcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||| |||||||||||||||||||||||||||||||    
T  39901 atccgttgacaccaggtgtcaacggattcgttgaca 39936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 23778 - 23740
Alignment:
Q  321 aggatcctttgacaccaggtgtcaacggattcgttgaca 359  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  23778 aggatccattgacaccagttgtcaacggattcgttgaca 23740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 181020 - 181050
Alignment:
Q  329 ttgacaccaggtgtcaacggattcgttgaca 359  Q
    |||||||||||||||||||||||||||||||    
T  181020 ttgacaccaggtgtcaacggattcgttgaca 181050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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