View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1951_low_4 (Length: 356)
Name: NF1951_low_4
Description: NF1951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1951_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 48 - 351
Target Start/End: Original strand, 3909456 - 3909771
Alignment:
| Q |
48 |
atactttcaacttaatattgaccgaaatattcacgat----gcatcgatttactaatgagtactaaagtttgaagcgataattcaatcaattttttattt |
143 |
Q |
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| T |
3909456 |
atactttcaacttaatattgaccgaaatattcacgatttatgcatcgatttactaatgagtactaaagtttaaagcgataattcaatcaattttttattt |
3909555 |
T |
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| Q |
144 |
aggatatgaatcaattctttatcaatttgattgatctctattgacaattaagctcaacttctaatatcatta-nnnnnnngtta------gttggtgcaa |
236 |
Q |
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| T |
3909556 |
gggatatgaatcaattcttcatcaattcgattgatctctattgacaattaaactcaacttctaatatcattattttttttgttatatgttgttggtgcga |
3909655 |
T |
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| Q |
237 |
agttttcaatatcgtgtgataatgattaatatctcttgaagaacctatatg--acacaaaagtcattacttcctctaaccgaattttgttcatgctaagt |
334 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||| |
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| T |
3909656 |
agttttcaatatcgtgtgatagtgattaatatctcttgaagaacctatatgacacacaaaagtcattacttcctctaatcgaattttgttcatact-agt |
3909754 |
T |
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| Q |
335 |
gtatgtttcatctcact |
351 |
Q |
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||||||||||| ||||| |
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| T |
3909755 |
gtatgtttcatttcact |
3909771 |
T |
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