View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1951_low_8 (Length: 289)

Name: NF1951_low_8
Description: NF1951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1951_low_8
NF1951_low_8
[»] chr8 (4 HSPs)
chr8 (88-274)||(14694732-14694918)
chr8 (98-217)||(12132430-12132549)
chr8 (97-178)||(4362750-4362831)
chr8 (103-177)||(33332315-33332389)
[»] chr5 (4 HSPs)
chr5 (97-178)||(35885751-35885832)
chr5 (97-176)||(4630394-4630473)
chr5 (104-177)||(3432374-3432447)
chr5 (104-177)||(16167773-16167846)
[»] chr7 (7 HSPs)
chr7 (101-179)||(28029715-28029793)
chr7 (103-179)||(36430592-36430668)
chr7 (103-178)||(9901987-9902062)
chr7 (111-176)||(21515991-21516056)
chr7 (122-169)||(18343920-18343967)
chr7 (122-169)||(18344823-18344870)
chr7 (122-169)||(18347449-18347496)
[»] chr2 (3 HSPs)
chr2 (100-178)||(5246068-5246146)
chr2 (104-177)||(43903879-43903952)
chr2 (103-155)||(44030359-44030411)
[»] chr4 (7 HSPs)
chr4 (102-179)||(29275979-29276056)
chr4 (97-178)||(40818911-40818992)
chr4 (103-179)||(7328082-7328158)
chr4 (97-177)||(42243861-42243941)
chr4 (99-178)||(7984526-7984605)
chr4 (122-178)||(32270446-32270502)
chr4 (119-169)||(748594-748644)
[»] chr1 (2 HSPs)
chr1 (98-178)||(31972637-31972717)
chr1 (122-169)||(395468-395515)
[»] chr3 (1 HSPs)
chr3 (122-169)||(45082766-45082813)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 88 - 274
Target Start/End: Complemental strand, 14694918 - 14694732
Alignment:
Q  88 caaaaatacaaaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttggttgtgtt 187  Q
    |||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14694918 caaaaaaacaaacaatcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttggttgtgtt 14694819  T
Q  188 ggttttacttgtcattaaagaaaaaagagaccgttaaaagacctattttcattatttccgaaaatgcgtattaccttagctagtttt 274  Q
    | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14694818 gatgttacttgtcattaaacaaaaaagagaccgttaaaagacctattttcattatttccgaaaatgcatatcaccttagctagtttt 14694732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 12132549 - 12132430
Alignment:
Q  98 aaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttggttgtgttggttttactt 197  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  12132549 aaaattcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttggttgtttttgtttcactt 12132450  T
Q  198 gtcattaaagaaaaaagaga 217  Q
    || | |||||| ||| ||||    
T  12132449 gttaataaagagaaaggaga 12132430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 4362750 - 4362831
Alignment:
Q  97 aaaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4362750 aaaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 4362831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 33332315 - 33332389
Alignment:
Q  103 tcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 177  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33332315 tcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 33332389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 35885751 - 35885832
Alignment:
Q  97 aaaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35885751 aaaaaatcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 35885832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 4630473 - 4630394
Alignment:
Q  97 aaaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 176  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630473 aaaacatcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 4630394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 3432447 - 3432374
Alignment:
Q  104 cgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 177  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3432447 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 3432374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 16167846 - 16167773
Alignment:
Q  104 cgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 177  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16167846 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 16167773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 28029715 - 28029793
Alignment:
Q  101 aatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 179  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28029715 aatcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 28029793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 36430592 - 36430668
Alignment:
Q  103 tcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 179  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36430592 tcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 36430668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 9902062 - 9901987
Alignment:
Q  103 tcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9902062 tcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 9901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 21516056 - 21515991
Alignment:
Q  111 cgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 176  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21516056 cgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 21515991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 18343967 - 18343920
Alignment:
Q  122 aacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 169  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  18343967 aacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 18343920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 18344870 - 18344823
Alignment:
Q  122 aacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 169  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  18344870 aacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 18344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 18347496 - 18347449
Alignment:
Q  122 aacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 169  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  18347496 aacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 18347449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 5246146 - 5246068
Alignment:
Q  100 aaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5246146 aaatcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 5246068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 43903879 - 43903952
Alignment:
Q  104 cgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 177  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43903879 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 43903952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 44030411 - 44030359
Alignment:
Q  103 tcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctc 155  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  44030411 tcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctc 44030359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 29275979 - 29276056
Alignment:
Q  102 atcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 179  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275979 atcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 29276056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 40818911 - 40818992
Alignment:
Q  97 aaaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40818911 aaaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 40818992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 7328082 - 7328158
Alignment:
Q  103 tcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 179  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328082 tcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggcttg 7328158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 42243941 - 42243861
Alignment:
Q  97 aaaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 177  Q
    |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42243941 aaaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 42243861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 7984605 - 7984526
Alignment:
Q  99 aaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7984605 aaaagcgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 7984526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 32270502 - 32270446
Alignment:
Q  122 aacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32270502 aacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 32270446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 748644 - 748594
Alignment:
Q  119 tcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 169  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  748644 tcaaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 748594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 31972637 - 31972717
Alignment:
Q  98 aaaaatcgcccatcgtggggctcaaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 178  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31972637 aaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 31972717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 395468 - 395515
Alignment:
Q  122 aacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 169  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  395468 aacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 45082766 - 45082813
Alignment:
Q  122 aacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 169  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  45082766 aacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 45082813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University