View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19520_high_21 (Length: 474)

Name: NF19520_high_21
Description: NF19520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19520_high_21
NF19520_high_21
[»] chr7 (9 HSPs)
chr7 (20-228)||(39266690-39266898)
chr7 (308-425)||(3845604-3845721)
chr7 (226-291)||(85299-85364)
chr7 (226-291)||(39444985-39445050)
chr7 (226-287)||(40722602-40722663)
chr7 (226-266)||(48829730-48829770)
chr7 (190-228)||(48846906-48846944)
chr7 (247-292)||(23485479-23485524)
chr7 (247-291)||(24764953-24764998)
[»] chr5 (3 HSPs)
chr5 (55-227)||(24118451-24118625)
chr5 (226-291)||(29656927-29656992)
chr5 (230-292)||(10647734-10647797)
[»] chr4 (6 HSPs)
chr4 (98-227)||(19514460-19514590)
chr4 (226-292)||(56478922-56478988)
chr4 (226-287)||(16032628-16032689)
chr4 (226-291)||(6980520-6980585)
chr4 (247-291)||(37342028-37342072)
chr4 (247-292)||(1663574-1663620)
[»] chr2 (8 HSPs)
chr2 (23-228)||(28000685-28000891)
chr2 (226-287)||(12447183-12447244)
chr2 (226-291)||(43800427-43800492)
chr2 (226-292)||(9059885-9059951)
chr2 (247-291)||(25890498-25890542)
chr2 (162-228)||(41579265-41579331)
chr2 (162-228)||(39356683-39356750)
chr2 (247-292)||(4814602-4814647)
[»] chr3 (11 HSPs)
chr3 (226-292)||(41828186-41828252)
chr3 (226-292)||(54418906-54418972)
chr3 (226-290)||(14175721-14175785)
chr3 (244-291)||(953057-953104)
chr3 (228-294)||(41828007-41828074)
chr3 (162-228)||(43808759-43808825)
chr3 (161-228)||(19468815-19468882)
chr3 (230-291)||(9640246-9640308)
chr3 (226-291)||(48760984-48761050)
chr3 (230-291)||(48761239-48761301)
chr3 (230-290)||(48760757-48760818)
[»] chr1 (8 HSPs)
chr1 (226-292)||(23260952-23261018)
chr1 (226-292)||(42772457-42772523)
chr1 (226-290)||(47914613-47914677)
chr1 (226-278)||(51854523-51854575)
chr1 (226-276)||(28238202-28238252)
chr1 (152-228)||(38505968-38506044)
chr1 (162-228)||(22370311-22370377)
chr1 (230-290)||(10893924-10893985)
[»] scaffold0007 (2 HSPs)
scaffold0007 (95-227)||(35669-35802)
scaffold0007 (95-227)||(40982-41115)
[»] chr6 (4 HSPs)
chr6 (226-291)||(29535404-29535469)
chr6 (227-292)||(29535871-29535936)
chr6 (226-291)||(29535634-29535699)
chr6 (230-291)||(5168955-5169017)
[»] scaffold1598 (1 HSPs)
scaffold1598 (230-291)||(176-238)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 39266690 - 39266898
Alignment:
Q  20 cagtcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgcggattttaggaaaaacaaaaccatcagtatttgaatttcaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  39266690 cagtcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgttgattttatgaaaaacaaaaccatcagtatttgaatttcaaa 39266789  T
Q  120 tttggcatataggaggagggaaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacc 219  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  39266790 tttggcatataggaggagggaaaattttaggcttaagtgaccattagcaattaatgaaggattattagagggaaaaattaggttaaatgatagcaagacc 39266889  T
Q  220 taataagca 228  Q
    |||||||||    
T  39266890 taataagca 39266898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 308 - 425
Target Start/End: Original strand, 3845604 - 3845721
Alignment:
Q  308 aaagcatccttggtactacaatcattttattgcggactttgaaaatcttatgagacatggtaattataataattgaactgctattcatcctctttgaatt 407  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3845604 aaagcatccttggtactataatcattttattgcggactttgaaaatcttatgagacatggtaattataataactgaactgctattcatcctctttgaatt 3845703  T
Q  408 agataattaaaagagaat 425  Q
    ||| ||||||||||||||    
T  3845704 agagaattaaaagagaat 3845721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 85299 - 85364
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  85299 gcaattttggagccaaaattctagggttaagttgttgcaacctaataagattaaggagtaagggat 85364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 39445050 - 39444985
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  39445050 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaagggat 39444985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 40722663 - 40722602
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaag 287  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| || ||| |||||||||    
T  40722663 gcaattttggagccaaatttctagggttaagttgttgcaacctaataaaatttaggagtaag 40722602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 48829770 - 48829730
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaac 266  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  48829770 gcaattttggagccaaatttctagggttaagttgttgcaac 48829730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 48846906 - 48846944
Alignment:
Q  190 ggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  48846906 ggaaaaattaggttaaactatagcaagacctaataagca 48846944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 23485524 - 23485479
Alignment:
Q  247 tagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||||||  ||||||||||| || ||||||||||||||||||    
T  23485524 tagggttaagtgtttgcaacctaataaaattaaggagtaagggata 23485479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 24764998 - 24764953
Alignment:
Q  247 tagggttaagttgttgc-aacctaacaagattaaggagtaagggat 291  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||    
T  24764998 tagggttaagttgttgctaacctaacaactttaaggagtaagggat 24764953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 24118625 - 24118451
Alignment:
Q  55 aaaaacaacacttattggtacgcggatt-ttaggaaaaacaaaaccatcagtatttgaatttcaaatttggcatataggaggagggaaaattt-taggtt 152  Q
    |||| ||||||||||   ||| |||||| ||||| ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||| || | |    
T  24118625 aaaaccaacacttatctatacacggattattagggaaaactaaaccatcagtatttgaatttcaaattaggcatagaagaggagggaaaatttgtaaggt 24118526  T
Q  153 taagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagc 227  Q
    |||| |||||||||||||||||||||| |||||| | ||||||||||||||||| | | ||||||||| ||||||    
T  24118525 taagggaccattagcaattaatgaaggtttattagagggaaaaattaggttaaaaggttgcaagaccttataagc 24118451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 29656927 - 29656992
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    |||||||||||| |||| || |||||||||||||||||||||||| |||||||| |||||||||||    
T  29656927 gcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaagagtaagggat 29656992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 10647734 - 10647797
Alignment:
Q  230 ttttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaagggata 292  Q
    |||| ||| ||||| | ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  10647734 ttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaagggata 10647797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 19514590 - 19514460
Alignment:
Q  98 ccatcagtatttgaatttcaaatttggcatataggaggagggaaaattt-taggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaa 196  Q
    ||||||| |||||||||||||||| |||||| | ||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||| | |||||||    
T  19514590 ccatcagcatttgaatttcaaattaggcatagaagaggagggaaaatttgtagggttaagggaccattagcaattaatgaaggtttattagagggaaaaa 19514491  T
Q  197 ttaggttaaatgatagcaagacctaataagc 227  Q
    |||||||||| | | ||||||||| ||||||    
T  19514490 ttaggttaaaaggttgcaagaccttataagc 19514460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 56478922 - 56478988
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  56478922 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggata 56478988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 16032628 - 16032689
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaag 287  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  16032628 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 16032689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 6980585 - 6980520
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    |||| ||||||| |||| || || |||||| |||||||||||||| ||||||||||||||||||||    
T  6980585 gcaactttggagccaaatttttaaggttaaattgttgcaacctaataagattaaggagtaagggat 6980520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 37342028 - 37342072
Alignment:
Q  247 tagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||    
T  37342028 tagggttaagttattgcaacctaataagattaatgagtaagggat 37342072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 1663574 - 1663620
Alignment:
Q  247 tagggttaagttgttgc-aacctaacaagattaaggagtaagggata 292  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  1663574 tagggttaagttgttgctaacctaacaactttaaggagtaagggata 1663620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 28000891 - 28000685
Alignment:
Q  23 tcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgcggatttta-ggaaaaacaaaaccatcag-tatttgaatttcaaat 120  Q
    ||||||||| |||||| |||| |||||||||| ||| |||||||||||| || |||||||||| ||||| ||  |||||||||   ||||||||||||||    
T  28000891 tcaaatgagtacattgaaatttaaataaaaatcaaaccaacacttattgataggcggattttatggaaatac--aaccatcagacttttgaatttcaaat 28000794  T
Q  121 ttggcatataggaggagggaaaattt-taggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacc 219  Q
      |||||| | |||||||||||||||  ||| || || || ||||||||||||||||| | |||||  | |||||||||||| | |||||||||| ||||    
T  28000793 ggggcatagaagaggagggaaaatttgcaggattgagggatcattagcaattaatgaaaggttatttgagggaaaaattagggttaatgatagcatgacc 28000694  T
Q  220 taataagca 228  Q
    ||| |||||    
T  28000693 taacaagca 28000685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 12447183 - 12447244
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaag 287  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  12447183 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag 12447244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 43800427 - 43800492
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43800427 gcaatttcggagtcaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggat 43800492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 9059885 - 9059951
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||| ||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  9059885 gcaattttagagtcaaatttttagggttaagttgttgcaacctaataagattaaggagtaagggata 9059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 25890498 - 25890542
Alignment:
Q  247 tagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  25890498 tagggttaagttgttgcaacctaataagattaaggagtaagggat 25890542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 41579331 - 41579265
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||  | |||||| | |||||||||||| | |||||||||| |||||||||||||    
T  41579331 attagcaattaatgacaggttattagagggaaaaattagggttaatgatagcatgacctaataagca 41579265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 39356750 - 39356683
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgat-agcaagacctaataagca 228  Q
    |||||||||||||||  |||||||| | |||||||||||||| | |||| ||| ||||||||||||||    
T  39356750 attagcaattaatgacagattattagagggaaaaattaggtttagtgataagctagacctaataagca 39356683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 4814647 - 4814602
Alignment:
Q  247 tagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||||||  ||||||||||| || ||||||||||||||||||    
T  4814647 tagggttaagtgtttgcaacctaataaaattaaggagtaagggata 4814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 41828252 - 41828186
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41828252 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggata 41828186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 54418972 - 54418906
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54418972 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggata 54418906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 14175721 - 14175785
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaaggga 290  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14175721 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaaggga 14175785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 953057 - 953104
Alignment:
Q  244 ttctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  953057 ttctagggttaagttgttgcaacctaataagattaaggagtaagggat 953104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 41828074 - 41828007
Alignment:
Q  228 aattttggaggcaaaattctagggtt-aagttgttgcaacctaacaagattaaggagtaagggatact 294  Q
    |||||||||| |||| || ||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  41828074 aattttggagccaaatttttagggtttaagttgttgcaacctaataagattaaggagtaaggaatact 41828007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 43808759 - 43808825
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||  | |||||| | |||||||||||| | |||||||||| |||||||||||||    
T  43808759 attagcaattaatgacagcttattagagggaaaaattagggttaatgatagcatgacctaataagca 43808825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 19468882 - 19468815
Alignment:
Q  161 cattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    ||||||||||||||||  ||||| || | |||||||||||||| | || | |||||||||||||||||    
T  19468882 cattagcaattaatgacagattagtagagggaaaaattaggtttagtgcttgcaagacctaataagca 19468815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 9640308 - 9640246
Alignment:
Q  230 ttttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaagggat 291  Q
    |||| ||| ||||| | ||||||||||||||||| ||||||||||  ||||||||||||||||    
T  9640308 ttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaagggat 9640246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 48761050 - 48760984
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaagggat 291  Q
    |||||||| ||| ||||| | ||||||||||||||||| ||||||||||  |||||||| |||||||    
T  48761050 gcaattttagagtcaaaaatttagggttaagttgttgctaacctaacaactttaaggagcaagggat 48760984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 48761301 - 48761239
Alignment:
Q  230 ttttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaagggat 291  Q
    |||| ||||||||| | ||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  48761301 ttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaaggagtaagggat 48761239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 48760818 - 48760757
Alignment:
Q  230 ttttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaaggga 290  Q
    |||| ||| ||||||| ||||||||||||||||| ||||||||||   ||||||||||||||    
T  48760818 ttttagagccaaaattttagggttaagttgttgctaacctaacaactctaaggagtaaggga 48760757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 23261018 - 23260952
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23261018 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggata 23260952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 42772523 - 42772457
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42772523 gcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggata 42772457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 47914613 - 47914677
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaaggga 290  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  47914613 gcaattttggagccaaatttctaaggttaagttgttgcaacctaataagattaaggagtaaggga 47914677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 51854523 - 51854575
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagatta 278  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||| |||||||    
T  51854523 gcaatcttggagccaaatttctagggttaagttgttgcaacctaataagatta 51854575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 28238202 - 28238252
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagat 276  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||| |||||    
T  28238202 gcaattttggagccaaatttctaaggttaagttgttgcaacctaataagat 28238252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 38506044 - 38505968
Alignment:
Q  152 ttaagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    ||||||||| | || ||||||||| | |||||||| | |||||| ||||||||| || ||||| |||||||||||||    
T  38506044 ttaagtgactaataacaattaatgcaagattattagagggaaaatttaggttaagtggtagcatgacctaataagca 38505968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 22370377 - 22370311
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||  | |||||| | |||||||||||| | |||||||| | |||||||||||||    
T  22370377 attagcaattaatgacagcttattagagggaaaaattagggttaatgatagtatgacctaataagca 22370311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 10893924 - 10893985
Alignment:
Q  230 ttttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaaggga 290  Q
    |||| ||| ||||| | ||||||||||||||||| ||||||||||  |||||||||||||||    
T  10893924 ttttagagccaaaaatttagggttaagttgttgccaacctaacaactttaaggagtaaggga 10893985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 35802 - 35669
Alignment:
Q  95 aaaccatcagtatttgaatttcaaatttggcatataggaggaggg-aaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaa 193  Q
    ||||||||| ||||||||||||||||| |||||| | |||||||| |||||| || | ||||| |||||||||||| ||||||||  |||||| | ||||    
T  35802 aaaccatcactatttgaatttcaaattaggcatagaagaggagggaaaaattgtaaggttaagggaccattagcaaataatgaagctttattagagggaa 35703  T
Q  194 aaattaggttaaatgatagcaagacctaataagc 227  Q
    |||||| |||||| | | ||||||||| ||||||    
T  35702 aaattatgttaaaaggttgcaagaccttataagc 35669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 41115 - 40982
Alignment:
Q  95 aaaccatcagtatttgaatttcaaatttggcatataggaggaggg-aaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaa 193  Q
    ||||||||| ||||||||||||||||| |||||| | |||||||| |||||| || | ||||| |||||||||||| ||||||||  |||||| | ||||    
T  41115 aaaccatcactatttgaatttcaaattaggcatagaagaggagggaaaaattgtaaggttaagggaccattagcaaataatgaagctttattagagggaa 41016  T
Q  194 aaattaggttaaatgatagcaagacctaataagc 227  Q
    |||||| |||||| | | ||||||||| ||||||    
T  41015 aaattatgttaaaaggttgcaagaccttataagc 40982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 29535404 - 29535469
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    |||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  29535404 gcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaagggat 29535469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 29535871 - 29535936
Alignment:
Q  227 caattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggata 292  Q
    ||||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  29535871 caattttggagccaaatttctagggttaaattgttgcaacctaataagattaaggagtaagggata 29535936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 29535634 - 29535699
Alignment:
Q  226 gcaattttggaggcaaaattctagggttaagttgttgcaacctaacaagattaaggagtaagggat 291  Q
    ||||||||| || |||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  29535634 gcaattttgaagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaagggat 29535699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 5169017 - 5168955
Alignment:
Q  230 ttttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaagggat 291  Q
    |||| ||||||||| | ||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  5169017 ttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaaggagtaagggat 5168955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1598 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 238 - 176
Alignment:
Q  230 ttttggaggcaaaattctagggttaagttgttgc-aacctaacaagattaaggagtaagggat 291  Q
    |||| ||||||||| | ||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  238 ttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaaggagtaagggat 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University